Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00686 ATGACAGAAGTTGAAATTCCTCAGTTTTTTGCTTGTCCCATTTCGCTTCAGATCATGAAGGACCCAGTGACAACCGTTACGGGTATAACCTACGACAGAGAAAGCATCGAACACTGGTTGCTGAAAGCGAAAGATTGCAGGTGTCCGATCACAAAGCAACCATTGCCACGAAACTCAGAGTTCTTAACCCCAAACCACACGCTTCGGAGGCTAATCCAAGCGTGGTGTTCAGCTAACGAGGCAAACGGTGTTGACAAAATTCCAACACCGAAATCCCCTCTTAGCAATGCCAACGTCGAAAAGTTCGTGAAGGATCTAGAAATTCCTCGACGTTTTCAAAACGCAATGATGAAGTTGCATAACCTTGCAGTAGAGAACGAGAGGAACATAAGGTGCATGGCTTCAGCGGGTGTAGCAGAAGCTATGGTGCACGTGATCACAAATCGTTTCAGGCAAGACAAAACGGCGTCGTGCGTTGAAGAGGCTCTGAGGATTCTTCGTTTGCTTTGGAGTAGTGCCAATGTGGTGGAGAAAAACCACATGAAGAGCTTGGTGGGTCAGAACTGTGACTTTCTGAACTCGTTGACTTGGGTTTTGCAGCTTCAATCTAAGAACAACGTCAAGGTAATAAACGAAGCAATGCCTATATTGAAATTGACAATTGAAGCCAAAGATTCAACCCCTTTAGGGAGCTTAAGGCTTGAATTCTTCAGAGTGATTGTGAGTGTGATGAAAAATAGAGAACTCTCTCAGCAAGCTATTAAATCTGCATTGCATGTGCTCATAGAAACGTGTCCTTTTGGGAGAAATAGAACGAAGATAGTGGAAGCAGGTGCGGTGGAGGAGCTCATTGAACTTGCACTTGAAAAACCAGAAAAGAATCTAACAGAACTCGTGTTCATCCTTTTGGCGCATCTGTGTTCCTGTGCTGATGGTAGAGAACAGTTTCTGCAGCATGCTGCAGGCATTGCTGTAGTTTCCAAAAGAATCCTTAGGGTTTCTCCAACCATCGATGATCGAGCTCTTCATATATTTTCCTTGATTTCAAAGTTTCAGCATCTAATGAAGTTGTGCAAGAGATGCTGA 1086 0.4411 MTEVEIPQFFACPISLQIMKDPVTTVTGITYDRESIEHWLLKAKDCRCPITKQPLPRNSEFLTPNHTLRRLIQAWCSANEANGVDKIPTPKSPLSNANVEKFVKDLEIPRRFQNAMMKLHNLAVENERNIRCMASAGVAEAMVHVITNRFRQDKTASCVEEALRILRLLWSSANVVEKNHMKSLVGQNCDFLNSLTWVLQLQSKNNVKVINEAMPILKLTIEAKDSTPLGSLRLEFFRVIVSVMKNRELSQQAIKSALHVLIETCPFGRNRTKIVEAGAVEELIELALEKPEKNLTELVFILLAHLCSCADGREQFLQHAAGIAVVSKRILRVSPTIDDRALHIFSLISKFQHLMKLCKRC 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00686 361 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Spst5g00686 361 PANTHER WDSAM1 PROTEIN 3 353 IPR045185 GO:0061630
Spst5g00686 361 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Spst5g00686 361 SUPERFAMILY RING/U-box 3 84 - -
Spst5g00686 361 CDD RING-Ubox_PUB 7 55 IPR045210 -
Spst5g00686 361 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Spst5g00686 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Spst5g00686 361 Gene3D - 107 346 IPR011989 -
Spst5g00686 361 SUPERFAMILY ARM repeat 113 349 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00686 Spst-Chr5 5932537 5933622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00686 3 351 U-box Gene Family AT2G35930 40.793 1.97e-84 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00686 - - gmx:100778547 593.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00686 5 5932537 5933622 Spst11g01147 11 35802743 35803975 PCT