Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00681 ATGTTTGGGATGGTAGATTTGCCTTATCAGTCATTTCAACTCGGGATTGAAGAAGAGGACCCAGTCAAGTCTTTGATTAACAAAATGACTGCAAACAATTCAGTTATCATTGCAGGTGAAGGTATGATTGGACGGGCTGCATTTGCAGGCAGCCATCAGTGGATTCTCTTCAATAGTTTCGCAAAAGATGTATATCCACCAGAGTTCTACACTGAACTGCATCACCAATTTTCAGCTGGAATACAGACAGTAGCAGTTATTCCTGTACTTCCTCATGGGGTTGTTCAACTTGGTTCCTACTTGCCTATAATTGAGAATATGGGATTTGTGACTGATGTAAAGAGATTGATCTTCCAATTAGGATCGGTTCCTGGTGCCCTTCTATCTGAATACTATTCAGCAAATCTTTCTACTGAACGACTTGCTGGACCTTCTATAACTGGTGTGCCAGTGTCCATTGACCCACCTGTCATTACCTCAAATTGCACTCCCTCATTAACTAATGGCTCCAATCAGCAAAGTAATTCATCTCTTACTTCCAGGCCTTTTGTTCAAACGCCTTGCCCTTTAAATGCAGAGACAAATACCTGCCAGGGGTCTGCACTGACACCCCAAACCTGTAAACTTAACCAGATATCTAGCAACCATTGCCAACCAACGGTTATTCCAATGAGTAAAACAAACATCTATGGTCAACAAGAGAATAGGGTGATGGAGGCTGAAGTGATAACCTCAGATCTTGATTCCTGCCTGCAGCAACATTCTGTTTCATATAATGCAAGATCTGTATTCAATAACATGACTGGTTCTGGGTCTTTTGGTCAATCTTGTCAAAATGATGATAACCTAACATTAATGGAGCAAAAAATCATATCAGCCATTGGGAATCAAGATAATGTTAATCCATGTTTAAGTGTGTCAAGAACCTTAAACATACCTAATCTAAAAATAGATGGAGGCCGCATATTTGGCCACGGTATGAGGTCTAGCAGTGCTTCTTCTCTAGGAGGAATCCCAACGCATGCTGGGATTAGTGCCCTTTTGAGGTCAAATCTAATTACTAGTTCTGGTTCAAAATCTCCCAAAGCATCCACGGCTGATTTATCTGGACTGGAAGTTGGGATTGGGCTCCAAAATTGTGATTCTTCAACTAAAACTAGGGGTTGTTCTTTGGCTAAATCGACTAGTCAATCTGGCACTTTTCCCATGCATGCAGAACGTTCTAATCAGAACATCCTCCCTGTAGATTTAAAGTGTGTTTCACAAAATCAGAAGATAGACTATGATTTGCTTCAGGTCCCTAACCTCCCCACTTTTCATGTCGACGAACGAGTGCCCATTAGTGGTCAAATCCCTGGTTCTGCCCATGATTGCCTTAGTAAAGATGGTACTAGTCAATCTATGATGATAATGAATTCTAAACTCAAACTAGATTGTGCTAAACCTCCATCAGGGGATGATCTGTTTGATGTTTTAGGGGTGGATTTCAAAAACAAATTGCTGAACGGAAACTGGAATAAACACTTTGCTGATGAATTTGATGCAAAAACAGAACATATGGACAAAAAGTTAGCACCTATGAATATGCAGGGGACAACTACAAATCCTGATATTTATTCAGTTAAAGAAGCAATATCAGACAGTGGCATATTCTCTGGAACGGGAACAGACCACCTCTTGGATGCAGTGGTCTCCAAAGCCAAATCTGTTGTAAAACAGGATTCTGATGACATGTCTTGCAGGACAACATTGACAAGGAATAGTACTTCCTCTGTTCCCTCTCCTACTTGCAGAACGGTTATGTCCAGTCATTTCCAAGGGGGATTGTTTGATTTTCCTAAGAATGGTAGTAAAACAGGTGCCACTGAGGCTAGTTTTCTTAGCTCCAGAGGTAACAAGGAAGAGGCTGGAAACTGTTCTCAAACTAGTTCTGTTTATGGCTCTCAACTTAGTTCATGGGTTGAGAATAGTGGGAGTGTTAAACGCGAGAATAGTGTTTCAACCGGATACTCAAAGAGACCAGATGAGGCTTGCAAACCAAATCGCAAAAGGCTTAAACCAGGAGAGAATCCTAGGCCTCGCCCGAAAGATCGTCAAATGATTCAAGATCGAGTGAAAGAATTACGAGAAATTGTGCCAAACGGAGCAAAATGTAGCATAGATGCACTTTTGGAACGGACCATTAAGCACATGCTTTTCTTGCAAACTGTGACAAAGCATGCTGAGAAGCTGAAACAAACAGGGGAGTCTAAGATTATCCATAAGGAAGGTGGGCTGGTTTTGAAAGACAACTTTGAGGGAGGAGCTACATGGGCATATGAAGTTGGCTCACAATCAATGGTTTGTCCTATTGTAGTGGAGGACCTGAACCCTCCTCGACAGATGCTAGTGGAGATGCTTTGTGAGGAACGAGGTTTCTTTTTGGAAATAGCCGACTTAATCAGAGGATTGGGTTTAACCATATTGAAAGGGGTAATGGAAGCTCACAATGACAAAATCTGGGCACGCTTTGCTGTTGAGGCAAACAGGGACGTGACAAGGATGGAAATATTCATGTCACTCGTTCGTCTTTTGGAGCAAACGGTGAAAGGAAATGCATCTTCATCCAATGCTATTGATAACATCTATCACACTTTTCCACAGGCTACTCAGATACCAGCAACTGGAAGGCCTAGTAGTTTGCAATGA 2688 0.4178 MFGMVDLPYQSFQLGIEEEDPVKSLINKMTANNSVIIAGEGMIGRAAFAGSHQWILFNSFAKDVYPPEFYTELHHQFSAGIQTVAVIPVLPHGVVQLGSYLPIIENMGFVTDVKRLIFQLGSVPGALLSEYYSANLSTERLAGPSITGVPVSIDPPVITSNCTPSLTNGSNQQSNSSLTSRPFVQTPCPLNAETNTCQGSALTPQTCKLNQISSNHCQPTVIPMSKTNIYGQQENRVMEAEVITSDLDSCLQQHSVSYNARSVFNNMTGSGSFGQSCQNDDNLTLMEQKIISAIGNQDNVNPCLSVSRTLNIPNLKIDGGRIFGHGMRSSSASSLGGIPTHAGISALLRSNLITSSGSKSPKASTADLSGLEVGIGLQNCDSSTKTRGCSLAKSTSQSGTFPMHAERSNQNILPVDLKCVSQNQKIDYDLLQVPNLPTFHVDERVPISGQIPGSAHDCLSKDGTSQSMMIMNSKLKLDCAKPPSGDDLFDVLGVDFKNKLLNGNWNKHFADEFDAKTEHMDKKLAPMNMQGTTTNPDIYSVKEAISDSGIFSGTGTDHLLDAVVSKAKSVVKQDSDDMSCRTTLTRNSTSSVPSPTCRTVMSSHFQGGLFDFPKNGSKTGATEASFLSSRGNKEEAGNCSQTSSVYGSQLSSWVENSGSVKRENSVSTGYSKRPDEACKPNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLERTIKHMLFLQTVTKHAEKLKQTGESKIIHKEGGLVLKDNFEGGATWAYEVGSQSMVCPIVVEDLNPPRQMLVEMLCEERGFFLEIADLIRGLGLTILKGVMEAHNDKIWARFAVEANRDVTRMEIFMSLVRLLEQTVKGNASSSNAIDNIYHTFPQATQIPATGRPSSLQ 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00681 895 MobiDBLite consensus disorder prediction 623 700 - -
Spst5g00681 895 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 16 889 IPR043561 GO:0003700|GO:0006355
Spst5g00681 895 MobiDBLite consensus disorder prediction 675 700 - -
Spst5g00681 895 CDD bHLH_AtLHW_like 689 758 - -
Spst5g00681 895 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 685 734 IPR011598 GO:0046983
Spst5g00681 895 MobiDBLite consensus disorder prediction 623 671 - -
Spst5g00681 895 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 19 116 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00681 Spst-Chr5 5852259 5857351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00681 486 889 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 55.392 2.67e-126 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00681 - - gmx:100787748 1398.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00681 5 5852259 5857351 Spst5g00681 5 5852259 5857351 ECH
Spst5g00681 5 5852259 5857351 Spst11g01152 11 35869797 35876225 PCT