Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00678 ATGGAAGGTGTTCAGATAGAAGAAGTCTTCGTCTTGTTTTGTTTTTTTTTAATCATTACAATGAGTTATGGCGCTACAAACCCAAATGATGTCAAAGTTTTGAATGATTTCAGAAAAGGGTTGGAAAATCCGGAGCTTTTGAAGTGGCCAGAGGAGGGAGATGATCCCTGTGGTCCTCCTTTATGGCCTTTTGTGTACTGTTCTGGAGATAGAGTAAATCAGATTCAGGCTAAAAATCTTGGTCTTAGAGGGTCATTGCCTCAAAACTTTAATCAACTCTCAGAACTGTACAATTTGGGTCTCCAACGCAACAATCTTAGTGGGACGTTGCCTACTTTTAGGGGACTATCCAAATTGGAATTTGCTTTCTTGGATTACAATAAATTTGATGCAATCCCATCTGATTTCTTTAATGGACTTAGCAGCCTCAGGGTCTTGTCTTTGGAAGAAAATCCACTGAATATGAGCAGTGGTTGGTTGTTTCCCTTGGATTTAGAAAAGTCAGAGCAGTTGACCAATCTTTCTCTGGTGCAATGTAACTTGGTTGGACCATTACCAGATTTTCTGGGCACATTGCCATCTCTCACAAATCTGAGGCTTTCGGGTAACAAGCTGTCTGGTGCCATACCAGCAACTTTTGCCCAATCTTCAATCCAGGTTTTGTGGTTGAATGATCAAGAAGGTGGTGGGTTGAGTGGTCCTATTGATGTTATTGCTTCAATGGCTTTCCTTAGACAGGTTTGGTTACATGGAAACCAGTTCACTGGGCCAATACCTCAGAATATTGGAAATCTAACTTACTTGAAGGAACTCAATCTCAATAGTAATCAACTTGTTGGCTTGATTCCAGAGTCTCTAGCACTTATGGACCTTGATATCCTTGTGTTAAACAATAACATGCTAATGGGTCCGATACCGAAATTCAAGGCTGCCAATTTTTCTTACATGTACAATTTATTTTGTCAAAATCAGCCTGGGCTTGAATGTGCCCCTCATGTTACTACTTTGCTGGATTTTCTAGATAAGCTGAATTACCCCTCGTTTCTCATCTCTGATTGGTCTGGTGATGAACCATGCACACGCAGCACAGGGTCATGGTTTGGATTGAGCTGCAATTCCAACTCAGAGATATCTATTATCAATCTACCTAGACACAAGCTAAACGGTACTCTAAGTCCCTCACTTGCGAAGTTAGATTCACTACGTGAAATTAGGCTAGCAGGAAACAACATAACCGGCTCTGTTCCCACCAATTTTACCAAATTAAAATCTTTGGAGTTGTTGGATTTAAGCGATAACAACCTTGAGCCTCCATTTCCAAACTTTCATAATGATGTGAAGGTTATCATTATGGGTAATCCTCTTCTTCCGAATGAAACTGGAGGAAGTCCCAGTCCTATGCCTGTTAACAGCCCTTCACCACAAAATCCATCACAGCCTCCATCCTCTCATAAGCCACCTGTTCCAGATCAGAGTTCAAGATCAAATCAATCCAAGCCAAATGACTTGAAAAGATTCAAAACAGTAGCAATAGTGGCTGGAGTTGTTGTGTTTACCGTTATAGCTCTTTTGATTGTTTATTTCTTCCTATATTGTAGGAAGAACAAAAAAGCCTCTTTGGATGCTCCAAGTTCCATTGTGGTTCACCCTCACAATCCATCTGATCCTGACAACATAGTTAAAATTGCAGTTTCAAACACCACCGGAAGTTTGTCAACAAAGACTGGTACAAGTTCTCTTGGTAACATTAGTGGTGAAACTCAAAACTGTCACACAATTGAGGATGGCAACCTTGTCATCTCTATACAAGTACTACGCAAGGTTACCAATGACTTTGCTTCAGAAAATGAACTAGGTCGTGGAGGGTTTGGGACTGTTTACAAGGGAGAACTAGAAGACGGGACAAAAATAGCAGTGAAGAGAATGGAGCATGGGGTTATTAGCAGTAAGGCAATAGAGGAGTTTCAAGCCGAAATAGCTGTTCTTTCCAAGGTCCGGCACCGGCATCTGGTATCCTTGTTGGGGTATTCCATTGAAGGCAATGAAAGACTTTTGGTTTATGAATATATGTCTCTTGGAGCTTTAAGCCAGCATCTTTTTCACTGGAAGAGCTTAAAGTTGGAGCCTTTGTCTTGGTCAAAGAGGCTTGCAATAGCACTAGATGTTGCTAGAGGGATAGAATACCTTCACAGTCTTGCCCGTCAGACTTTTATTCATCGAGATCTTAAGTCTTCTAATATCTTATTGGGTGATGATTTCCGTGCTAAAGTTTCAGATTTTGGTTTGGTGAAGCATGCCCCAGACAGTGAGAAGTCTGTAGTAACCAAACTTGCTGGGACATTTGGATACCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACCACAAAAGTTGATGTGTTCAGCTACGGTGTGGTTTTGATGGAACTTCTGACTGGACTTGTGGCACTTGATGAGAGCCGGCCAGAGGAAAGCCGGTACTTGGCTGAATGGTTTTGGCGGATTAAATCAAGCAAGGAGAAGCTTATGGCTGCCATTGATCCAGTTGTGGAAGTATCTGACGAAACTTTTGAGAGCGTAAGTATTGTAGCTGAACTTGCTGGACATTGCACTGCAAGGGAAGCAAATCATAGGCCAGATATGGGTCATGCAGTCAATGTCCTGGCAGCATTGGTGGAAAAATGGCAACCAGTTGACGATGAATTAGATTGCTACTCTGGCATTGACTACACAAGACCACTTCCTCAAATGTTGAAGATTTGGAAGGAAGCAGAAAGCCAAGAGTTCAGCTATTCTTCTAGTCTTGACAACAGCAGAAGCAGTATTGCAGCTAGGCCCACTGGGTTTGCAGACTCTTTTACTTCTGCTGATGCAAGATAA 2880 0.4188 MEGVQIEEVFVLFCFFLIITMSYGATNPNDVKVLNDFRKGLENPELLKWPEEGDDPCGPPLWPFVYCSGDRVNQIQAKNLGLRGSLPQNFNQLSELYNLGLQRNNLSGTLPTFRGLSKLEFAFLDYNKFDAIPSDFFNGLSSLRVLSLEENPLNMSSGWLFPLDLEKSEQLTNLSLVQCNLVGPLPDFLGTLPSLTNLRLSGNKLSGAIPATFAQSSIQVLWLNDQEGGGLSGPIDVIASMAFLRQVWLHGNQFTGPIPQNIGNLTYLKELNLNSNQLVGLIPESLALMDLDILVLNNNMLMGPIPKFKAANFSYMYNLFCQNQPGLECAPHVTTLLDFLDKLNYPSFLISDWSGDEPCTRSTGSWFGLSCNSNSEISIINLPRHKLNGTLSPSLAKLDSLREIRLAGNNITGSVPTNFTKLKSLELLDLSDNNLEPPFPNFHNDVKVIIMGNPLLPNETGGSPSPMPVNSPSPQNPSQPPSSHKPPVPDQSSRSNQSKPNDLKRFKTVAIVAGVVVFTVIALLIVYFFLYCRKNKKASLDAPSSIVVHPHNPSDPDNIVKIAVSNTTGSLSTKTGTSSLGNISGETQNCHTIEDGNLVISIQVLRKVTNDFASENELGRGGFGTVYKGELEDGTKIAVKRMEHGVISSKAIEEFQAEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMSLGALSQHLFHWKSLKLEPLSWSKRLAIALDVARGIEYLHSLARQTFIHRDLKSSNILLGDDFRAKVSDFGLVKHAPDSEKSVVTKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLVALDESRPEESRYLAEWFWRIKSSKEKLMAAIDPVVEVSDETFESVSIVAELAGHCTAREANHRPDMGHAVNVLAALVEKWQPVDDELDCYSGIDYTRPLPQMLKIWKEAESQEFSYSSSLDNSRSSIAARPTGFADSFTSADAR 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00678 959 FunFam receptor protein kinase TMK1 690 907 - -
Spst5g00678 959 CDD STKc_IRAK 618 888 - -
Spst5g00678 959 ProSitePatterns Protein kinases ATP-binding region signature. 618 640 IPR017441 GO:0005524
Spst5g00678 959 SMART serkin_6 612 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00678 959 Gene3D Ribonuclease Inhibitor 27 325 IPR032675 -
Spst5g00678 959 ProSitePatterns Serine/Threonine protein kinases active-site signature. 737 749 IPR008271 GO:0004672|GO:0006468
Spst5g00678 959 MobiDBLite consensus disorder prediction 467 487 - -
Spst5g00678 959 PANTHER OSJNBA0070M12.3 PROTEIN 11 959 - -
Spst5g00678 959 FunFam Receptor-like kinase TMK4 28 326 - -
Spst5g00678 959 Gene3D Transferase(Phosphotransferase) domain 1 690 905 - -
Spst5g00678 959 SUPERFAMILY L domain-like 66 455 - -
Spst5g00678 959 Gene3D Ribonuclease Inhibitor 331 459 IPR032675 -
Spst5g00678 959 Pfam Leucine rich repeat N-terminal domain 334 372 IPR013210 -
Spst5g00678 959 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Spst5g00678 959 MobiDBLite consensus disorder prediction 455 501 - -
Spst5g00678 959 ProSiteProfiles Protein kinase domain profile. 612 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00678 959 Pfam Protein tyrosine and serine/threonine kinase 615 884 IPR001245 GO:0004672|GO:0006468
Spst5g00678 959 SUPERFAMILY Protein kinase-like (PK-like) 592 888 IPR011009 -
Spst5g00678 959 FunFam Leucine-rich repeat receptor-like kinase 331 459 - -
Spst5g00678 959 Gene3D Phosphorylase Kinase; domain 1 575 689 - -
Spst5g00678 959 SMART LRR_typ_2 116 139 IPR003591 -
Spst5g00678 959 SMART LRR_typ_2 192 215 IPR003591 -
Spst5g00678 959 SMART LRR_typ_2 140 163 IPR003591 -
Spst5g00678 959 SMART LRR_typ_2 398 421 IPR003591 -
Spst5g00678 959 SMART LRR_typ_2 265 288 IPR003591 -
Spst5g00678 959 FunFam receptor protein kinase TMK1 574 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00678 Spst-Chr5 5811937 5815208 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00678 84 906 Receptor kinase-like Gene Family AT1G55610 30.410 2.54e-82 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Spst5g00678 PK_Tyr_Ser-Thr 3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00678 K00924 - gmx:100785090 1623.99