Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00664 ATGGACGGGGTTTCCAGGGAAGCCCAGATGTCGATCGCTGCTTCGTCCATGTTTCCTGGCTTCAGATTCTGCCCCACCGATGAGGAGCTGATTTCTTATTACCTTAGGAAGAAATTGGACGGGCATGAAGAGAGTGTTCAAGTCATTTCTGAGGTTGAGCTCTGTAAATACGAGCCTTGGGATTTACCAGCCAAATCGTTCATTCAATCAGATAACGAATGGTTCTTCTTCTCTCCCCGTGGAAGGAAGTACCCAAATGGTTCACAAAGTAAAAGAGCGACTGAATGTGGATACTGGAAGGCCACCGGCAAAGAGCGTAATGTGAAGTCAGGTTCTAACGTTATAGGAACAAAGAGGACTTTGGTGTTCCACTTGGGACGTGCACCCAAAGGGGAAAGGACTGAATGGATTATGCATGAGTACTGCATCAATGACAAGTCTCAGGATTCTTTGGTCATTTGTCGGCTGAAGAGGAACGCAGAGTTCCGTTTGAGCGATCATTCGAATAGAGCTTCTTCAAGTCAATGGCGTCCCGTGAATTCACATGAAAGTGGTTGTGCCATCTCAGAAGTTGGTGGTATAGATCAAAGGGATGCTAGTGAGCAAGACAAAGAGGTAGGATGTAGCTCCAAGAGGAGCAGTAGCAGTTACGGTTCTCCTTCCAATGAACAGATAGATTCTGTCTCCGAATCCAATCATCGACCAGTTAATGAAGCTACTTTGACAGCATCTTCAGATCAACCAAAGGAGGTGTATGAAGAGGATTGTTACGCTGAGATACTGAAGGATGATATCATAAAATTAGATGAATCATCAATCTCGGCAGATGATCACACACGACCACAGGAACCAGCACAAATGAATCCTGCACAAGGCACAGCACAACGGAGAATAAGATTAAGGGTTAGGAATTCAAAGCCTTCTTCCCCTGCAGTAGTTGGTTTCCCAAGCACAATAATGCCCTCGTCAAAGAGTACCTTCTTTGCTGGAATAACCAACAGTTTGGTGGTACTTGTGTTCTTGGTTTTCACTTTGATATTTTTGGTCTTTGTTGCGTGGAGTCAAACAAGTGAAGTGTTATGA 1083 0.4469 MDGVSREAQMSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVELCKYEPWDLPAKSFIQSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKSGSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCINDKSQDSLVICRLKRNAEFRLSDHSNRASSSQWRPVNSHESGCAISEVGGIDQRDASEQDKEVGCSSKRSSSSYGSPSNEQIDSVSESNHRPVNEATLTASSDQPKEVYEEDCYAEILKDDIIKLDESSISADDHTRPQEPAQMNPAQGTAQRRIRLRVRNSKPSSPAVVGFPSTIMPSSKSTFFAGITNSLVVLVFLVFTLIFLVFVAWSQTSEVL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00664 360 MobiDBLite consensus disorder prediction 274 295 - -
Spst5g00664 360 SUPERFAMILY NAC domain 8 157 IPR036093 GO:0003677|GO:0006355
Spst5g00664 360 MobiDBLite consensus disorder prediction 278 293 - -
Spst5g00664 360 MobiDBLite consensus disorder prediction 209 235 - -
Spst5g00664 360 ProSiteProfiles NAC domain profile. 17 159 IPR003441 GO:0003677|GO:0006355
Spst5g00664 360 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 229 - -
Spst5g00664 360 Pfam No apical meristem (NAM) protein 19 142 IPR003441 GO:0003677|GO:0006355
Spst5g00664 360 MobiDBLite consensus disorder prediction 190 235 - -
Spst5g00664 360 Gene3D NAC domain 26 165 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00664 Spst-Chr5 5719325 5722396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00664 4 286 NAC Transcription Factor Family AT2G27300 53.357 1.52e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst5g00664 NAM 5.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00664 - - cam:101495489 506.138