Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00656 ATGGCAGATCTCCCACCTGGTTTTCGGTTCTACCCGACAGAGGAAGAGCTTGTTGCCTTCTATCTACACAACCAGCTCCAGGGACAAAGACACGACACAAGCAGGGTCATTCCAGTCATTGATATCAATGGCATAGAGCCTTCCAACCTCCCAACACTTGCTGGGGAGCTTTGTCGTGGAGACAAGGAGCAATGGTTCTTCTTTTCGCCGAGACAAGAGAGAGAGACGAGAGGAGGTAGACCCAGTAGAACCACCGCAAGTGGGTACTGGAAAGCCACTGGCTCTCCTGGCCACGTTTACTCTTCTGATAACAAAGTCATTGGGATGAAGAAAACCATGGTGTTTTACAAAGGGAAGGCTCCTACTGGAAGGAAAACCAAATGGAAGATGCATGAGTACAAAGCCATTCAACACTCTCACCAATCCAACACAACCCCTCCCACGTTGAGGCACGAATTCAGCTTGTGTCGTGTCTATGTTATGTCGGGAAGCTTTCGATCGTTTGATAGAAGACCATTAGACATGGCAAGAGGTGAGTTGCGAGTTGATGGGGATAGAGGTGCTGCTTCAACAAGTGCTCAACAGAAAGCACCAGTGGTGGATGGATCAAGTTCTTCTAATACTTCCCACTCTGGTGGTGCTCATATCCATGAGGCTGGAGCAGGGTCAAGTGGTACAAATTGGAATGAAAGTAATAGGGTTGAGGAACCACTTTGGGAATGGGAACAACTTAATTGGGCATGA 744 0.4812 MADLPPGFRFYPTEEELVAFYLHNQLQGQRHDTSRVIPVIDINGIEPSNLPTLAGELCRGDKEQWFFFSPRQERETRGGRPSRTTASGYWKATGSPGHVYSSDNKVIGMKKTMVFYKGKAPTGRKTKWKMHEYKAIQHSHQSNTTPPTLRHEFSLCRVYVMSGSFRSFDRRPLDMARGELRVDGDRGAASTSAQQKAPVVDGSSSSNTSHSGGAHIHEAGAGSSGTNWNESNRVEEPLWEWEQLNWA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00656 247 MobiDBLite consensus disorder prediction 188 213 - -
Spst5g00656 247 SUPERFAMILY NAC domain 2 160 IPR036093 GO:0003677|GO:0006355
Spst5g00656 247 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
Spst5g00656 247 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 203 - -
Spst5g00656 247 MobiDBLite consensus disorder prediction 71 90 - -
Spst5g00656 247 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Spst5g00656 247 MobiDBLite consensus disorder prediction 180 234 - -
Spst5g00656 247 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00656 Spst-Chr5 5643817 5644779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00656 1 246 NAC Transcription Factor Family AT5G22380 58.468 2.31e-96 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst5g00656 NAM 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00656 - - gmx:100784960 443.351