Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00647 ATGGGAAATAAGCTTCAGAGTGATGCTCTAAGAGAAGCTATCACAGGAATTATGGGTGATTCCAAAGAGAAGAACAGGAATTTTGTGGAGACAATTGAACTCCAGATTGGGCTGAAAAACTATGATCCCCAGAAGGACAAGCGTTTCAGTGGCTCTGTTAAGTTGCCTCATATTCCTCGCCCAAAGATGAAGATTTGCATGCTTGGAGATGCCCAACACGTTGAGGAGGCAGAGAAAATAGGATTGGACTACATGGATGTAGAGGCCTTGAAGAAGCTCAACAAAAATAAGAAATTGGTGAAAAAGCTAGCCAAGAAGTATCATGCGTTTTTAGCTTCTGAAGCAGTTATCAAGCAGATTCCTCGTCTCTTGGGGCCTGGTCTAAACAAAGCAGGGAAGTTCCCTACACTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAATGAGACTAAGGCTATGGTCAAATTCCAGCTTAAGAAGGTGCTCTGCATGGGAGTAGCCGTGGGGAATGTTAGCATGGAGGAAAAACAAATCTTCCAAAATGTACAACTGAGCGTTAACTTTCTTGTGTCATTGTTGAAAAAGAACTGGCAGAATGTTAGGTGCTTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTTAA 654 0.4266 MGNKLQSDALREAITGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00647 217 CDD Ribosomal_L1 10 216 IPR028364 -
Spst5g00647 217 ProSitePatterns Ribosomal protein L1 signature. 117 136 IPR023673 -
Spst5g00647 217 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 13 211 - -
Spst5g00647 217 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 3 217 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Spst5g00647 217 Gene3D - 66 155 IPR016095 -
Spst5g00647 217 Gene3D - 22 212 - -
Spst5g00647 217 FunFam Ribosomal protein 66 155 - -
Spst5g00647 217 FunFam Ribosomal protein L10a 2 120 - -
Spst5g00647 217 FunFam Ribosomal protein 138 215 - -
Spst5g00647 217 Pfam Ribosomal protein L1p/L10e family 23 211 IPR028364 -
Spst5g00647 217 SUPERFAMILY Ribosomal protein L1 23 217 IPR023674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00647 Spst-Chr5 5558260 5559819 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00647 3 217 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 89.767 3.87e-130 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00647 K02865 - gmx:100527698 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00647 5 5558260 5559819 Spst5g00647 5 5558260 5559819 ECH