Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00645 ATGACAAATGTACCTATTCTTACACAAGAATCAGCTACATTAACCATGGTACAAGTCAAGGGCAAGGGAAGTGGTCCTATGCAGTCCCGCCTACTTAGGATTCCAGAGGATGGGGCCAGAGGTGGAATGTACCATCATCATCAACACCAAGGAAAAAGCATTCATTCTTCTTCCAGAATGCCAATTCCTTCTGAGAGGCACATGTTCCTTCAAACGGGAAATGGGTCTGGTGATTCTGGACTTGTGCTCTCAACTGATGCCAAGCCAAGATTAAAATGGACACCAGATCTTCATGCCAGGTTTATAGAAGCAGTCAATCAGTTAGGGGGAGCTGACAAAGCAACTCCAAAAACAGTAATGAAACTCATGGGGATTCCAGGGCTTACTTTATATCATCTAAAGAGCCATCTTCAGAAGTATAGATTGAGCAAGAATCTGCATGGACAAAGCAACAACGTGACGCACAAAATCACAACAAGTGCAACAACTGGGGAAAGACTTTCTGAAACCAACGGAACTCACATGAACAAATTAAGCCTTGGACCGCAGGCTAACAAAGATTTGCATATAAGCGAGGCACTGCAGATGCAGATTGAGGTGCAGAGAAGGCTCAATGAACAACTTGAGGTACAAAGACACTTGCAGCTTAGGATAGAGGCCCAAGGAAAATACCTTCAGTCTGTGTTGGAGAAAGCTCAAGAGACTCTTGGCAGACAAAATTTGGGAATAGTAGGACTTGAAACTGCCAAAGTTCAACTATCAGAGCTGGTGTCCAAAGTATCATCTCAGTGCCTTAACTCAGCATTCTCAGAGATGAAGGAACTGCAAGGATTTTGCCCTCAGCAAACACACACCAACCAGCCAAACGATTGCTCAATGGATAGTTGCCTAACATCATGTGACAGATCACAAAAGGAGCAAGAGATTCAAAATGGCTGCTTAAGACACTTCAACAGCCATGTGTTCATGGATCGAAAGGAAGCCACAGAAGCTCCCAGCAACCTTAGGAACTCCGAACTCAAGTGGTGTGATGATGGGAAAAAGAACACCTTCCTTGCCCCATTGAACAAGAATGAAGAAAGAAGAAACTATGCAGCTGAAAACAGTCCTGGCAACTTATCCATGTCCATTGGACTTGAAAGAGAAACAGAAAATGGAAGCAGCGTGTATCCTGAAAGACTAATCACAGAAAGCCAATCAGAAGGTGATTTCCAGCACCGGAACAGAATCAAGACAGAAACAATGAAACCAGTGGATGAAAAGGTTTCTCAAGATTATAGGATGCCAGCTTCTTACTTTGTAGCAGCAAGATTGGACCTAAACAGCCATGGAGACAATGAAGCTGCAACCACTTGTAAACAACTGGACTTGAATAGATTCAGTTGGAGCTGA 1392 0.4361 MTNVPILTQESATLTMVQVKGKGSGPMQSRLLRIPEDGARGGMYHHHQHQGKSIHSSSRMPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTHKITTSATTGERLSETNGTHMNKLSLGPQANKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLETAKVQLSELVSKVSSQCLNSAFSEMKELQGFCPQQTHTNQPNDCSMDSCLTSCDRSQKEQEIQNGCLRHFNSHVFMDRKEATEAPSNLRNSELKWCDDGKKNTFLAPLNKNEERRNYAAENSPGNLSMSIGLERETENGSSVYPERLITESQSEGDFQHRNRIKTETMKPVDEKVSQDYRMPASYFVAARLDLNSHGDNEAATTCKQLDLNRFSWS 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00645 463 SUPERFAMILY Homeodomain-like 87 143 IPR009057 -
Spst5g00645 463 MobiDBLite consensus disorder prediction 162 181 - -
Spst5g00645 463 NCBIfam myb-like DNA-binding domain, SHAQKYF class 88 143 IPR006447 GO:0003677
Spst5g00645 463 Pfam MYB-CC type transfactor, LHEQLE motif 189 235 IPR025756 -
Spst5g00645 463 Pfam Myb-like DNA-binding domain 90 141 IPR001005 -
Spst5g00645 463 Gene3D - 87 145 - -
Spst5g00645 463 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 145 IPR017930 -
Spst5g00645 463 Coils Coil 191 211 - -
Spst5g00645 463 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 49 341 IPR044848 GO:0003700
Spst5g00645 463 MobiDBLite consensus disorder prediction 162 180 - -
Spst5g00645 463 FunFam Myb family transcription factor 87 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00645 Spst-Chr5 5549804 5553756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00645 120 463 G2-like Transcription Factor Family AT3G04030 49.280 6.71e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst5g00645 Myb_DNA-binding 4.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00645 - - gmx:100810396 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00645 5 5549804 5553756 Spst11g01194 11 36256280 36259209 PCT