Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00643 ATGGTGACGGCGGAGCTCCATTCTTGGCGGCTCTGCTCCCTGACCCGCCTCCACGATAGGTTGAATGCATTTCGCCGTTGGAACCCTGCAATGAGGACTGCCCGCGGTCAGAGCCCCTCTCTCTGCTCTGCTTGGCATGGCTTTGGGGCTGTGATGGTCACGCGGGCTCGCCAAACTCATTTTCCTTACTTTTTTCTTTTCCGTTGTAGGGTATGCAAACGAGTGCGGAAGGGCGAGAGTACTATGAAGCTTCGTTTGGTAATCGGCAATCAACTGCATCTTGATCCGGTACAACTTGTCTACTGGGGAAGAGATGATAATGGTCTAAAAAAAGTTTGCATGGCCAGCCACAGAATAGGAGAAATTGGTTTGTCTGAGTCAGGACCTTCAAGTCACCACATCCCGTATGGAGTGCTTCATGGAATTAACACTCCCGTATCAAGCTTAATCAATCAAGGATCTGCTTTTGATTTTGGGGAGCTGGAGGAAGCAATTGTTCTGCATGGAGTTAAGGGTAGAAATGATGATGGCAAAGCATCTTTATTCACGGCCAGACCTGCAGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCCCAAGAGGTGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGTCTTTCCAGCAAAACTGAGCCCCCCTTTGAGGCAGAATCTCCCATAAGTAAAAAGGCATCTACTTCAGATCACCAGGCTTTTGATCAGCAGCATCTGCAGCATAGACAGCAACTTCAACAGGATATGGCAAGTGATGCCCCAAGAACAGCCTCTTCACAGAATCAATCAGCAGCCAAATCACCACAAGAAAAGAGAAAGGGAGCTGGTTCTACATCAGAGAAAACACTTGATGCAAAGACTCTAAGACGTTTAGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAACTAGAATCAAGTAGATTAAAGCTTACCCAGATAGAACAAGAACTCCAAAGAGCACGCTCTCAGGGCTTGTTCGTGGATTGCGGTGGTGTTGGAAGCAATGTAAGCTCTGCAGGAGCCGCAATGTTTGACATGGAATATGGAAGATGGTTAGAAGAAGACCACAGGCTAATGGGGGAGCTCCGGAACGGGTTGCAAGTACCCTTATCAGATACTGATATGAGAGTGATGGTGGATGGATATCTCTCTCACTATGATGACATTTTCAGGCTCAAGGGTGTGGCCGCAAAATCAGACGTGTTCCACCTCATCAATGGCATGTGGACTTCCCAAGCTGAACGATGCTTCCTCTGGATTGGTGGTTTTAGACCCTCTGATCTCATCACGATGCTGATTCAACAGTTGGAGCCACTAGCTGAGCAACAGATTATGGGGATGTATGGCCTGAGACATTCCTCACAGCAAGCAGAAGAAGCACTCTCTCAGGGCCTTGAACAGTTGCAGCAGTCTCTGGTGGACACCATTGCGGGAGGCCCAGTTGTTGATGGTGTGCAACAAATGGTCGTTGCCATGAGCAAGTTAGCCAACCTTGAAGGATTTGTTCGTCAGGCTGATAATTTGAGGCAACAAACTCTTCATCAGTTATGTCGATTACTCACAGTTCGTCAAGCAGCGCGATGCTTCATTGTCATTGGAGAATACTATGGACGTCTTCGAGCCCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGACCTTGATAGGCGATGATAACTCGTGCCAAACAACAACGGAAATGCAAGTAGTCCAACATTCCCAGAATCATTTCTCAAATTTCTGA 1803 0.477 MVTAELHSWRLCSLTRLHDRLNAFRRWNPAMRTARGQSPSLCSAWHGFGAVMVTRARQTHFPYFFLFRCRVCKRVRKGESTMKLRLVIGNQLHLDPVQLVYWGRDDNGLKKVCMASHRIGEIGLSESGPSSHHIPYGVLHGINTPVSSLINQGSAFDFGELEEAIVLHGVKGRNDDGKASLFTARPAATLEMFPSWPMRFQQTPRGGSKSGGESTDSGLSSKTEPPFEAESPISKKASTSDHQAFDQQHLQHRQQLQQDMASDAPRTASSQNQSAAKSPQEKRKGAGSTSEKTLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQIEQELQRARSQGLFVDCGGVGSNVSSAGAAMFDMEYGRWLEEDHRLMGELRNGLQVPLSDTDMRVMVDGYLSHYDDIFRLKGVAAKSDVFHLINGMWTSQAERCFLWIGGFRPSDLITMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLEQLQQSLVDTIAGGPVVDGVQQMVVAMSKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFIVIGEYYGRLRALSSLWASRPRETLIGDDNSCQTTTEMQVVQHSQNHFSNF 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00643 600 Gene3D - 296 345 - -
Spst5g00643 600 CDD bZIP_HBP1b-like 297 347 - -
Spst5g00643 600 ProSiteProfiles DOG1 domain profile. 361 569 IPR025422 GO:0006351|GO:0043565
Spst5g00643 600 Pfam Seed dormancy control 379 453 IPR025422 GO:0006351|GO:0043565
Spst5g00643 600 MobiDBLite consensus disorder prediction 284 299 - -
Spst5g00643 600 Pfam bZIP transcription factor 296 332 IPR004827 GO:0003700|GO:0006355
Spst5g00643 600 MobiDBLite consensus disorder prediction 201 224 - -
Spst5g00643 600 SUPERFAMILY Leucine zipper domain 297 340 IPR046347 GO:0003700|GO:0006355
Spst5g00643 600 MobiDBLite consensus disorder prediction 233 279 - -
Spst5g00643 600 FunFam BZIP family transcription factor 296 345 - -
Spst5g00643 600 PANTHER TRANSCRIPTION FACTOR TGA9 242 572 - -
Spst5g00643 600 SMART brlzneu 293 358 IPR004827 GO:0003700|GO:0006355
Spst5g00643 600 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 300 315 IPR004827 GO:0003700|GO:0006355
Spst5g00643 600 MobiDBLite consensus disorder prediction 193 299 - -
Spst5g00643 600 Coils Coil 316 343 - -
Spst5g00643 600 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 295 339 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00643 Spst-Chr5 5527925 5540247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00643 239 600 bZIP Transcription Factor Family AT1G08320 68.320 3.35e-177 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Spst5g00643 DOG1 2.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00643 K14431 - gmx:100775461 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00643 5 5527925 5540247 Spst5g00643 5 5527925 5540247 ECH