Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00636 ATGAGTTTTAGAGAGTGCAATGTAGAAAACAAGAATCTGTGTCTTCAAACCCCAACTAATTTTATTGAGTGGCTCAAACCATCTTCTTCTCTAACAAGTTCAATATCTCCACCTCCTTCTTCCTTGGCTCAGCATGATCAACTTATCCATGAAACGATCCAGTTTTTTCCCTTCGAAGAAGACCATGGAGTGCAAAAGGATGGTTTAGAAGTGAAAGAAGAGAAGGTGGAACAGGTGACTGTGGCTTTGCACATTGGATTACCTAACACTGGAGTCCCTGACCCTGATCATGATGATCATGGTGAGAAAAAGGTTTTCCATGTAAAGGACGAAGAACCCTTGAAGAAAAGCTTCCAAGGTTGTTCTTTTAACCAGGAGAGAAGATTTTGGATACCAACTCCTGCTCAGATCCTTGTTGGACCGATGCAGTTTGCTTGCTCCATATGCAGCAAAACCTTCAACAGATATAACAATATGCAGATGCATATGTGGGGGCACGGATCCGAATTTAGGAAAGGACCAGACTCACTTAAAGGAACACAACCAGCTGCAATGCTAAGGCTACCATGTTACTGTTGTGCCCAAGGTTGCAAGAACAACATCAATCATCCGAGAGCTAAGCCCTTGAAGGACTTCAGAACTCTCCAAACCCACTACAAAAGAAAGCATGGTGCAAAACCATTTATGTGCCGAAAGTGTTCAAAATCCTTTGCAGTTAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGAAAGTTGTGGTATTGCACTTGTGGTTCAGATTTTAAGCACAAAAGGTCCCTCAAAGATCATATTAGATCCTTTGGAAAAGGCCACTCCCCACATCCTTCTCTTGAAGGCTTCGTTGAGGACGAGAAGGAATGCTTTACTGGATCTGATGAAGATGAATTTGCTCATACATGA 924 0.4253 MSFRECNVENKNLCLQTPTNFIEWLKPSSSLTSSISPPPSSLAQHDQLIHETIQFFPFEEDHGVQKDGLEVKEEKVEQVTVALHIGLPNTGVPDPDHDDHGEKKVFHVKDEEPLKKSFQGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFVEDEKECFTGSDEDEFAHT 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00636 307 SUPERFAMILY beta-beta-alpha zinc fingers 111 167 IPR036236 -
Spst5g00636 307 Gene3D Classic Zinc Finger 143 166 - -
Spst5g00636 307 FunFam Zinc finger protein WIP2 197 279 - -
Spst5g00636 307 SUPERFAMILY beta-beta-alpha zinc fingers 214 248 IPR036236 -
Spst5g00636 307 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Spst5g00636 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 171 IPR013087 -
Spst5g00636 307 Gene3D Classic Zinc Finger 184 276 - -
Spst5g00636 307 PANTHER ZINC FINGER PROTEIN WIP2 35 293 IPR043584 GO:0003700|GO:0010468
Spst5g00636 307 SMART c2h2final6 144 166 IPR013087 -
Spst5g00636 307 SMART c2h2final6 228 248 IPR013087 -
Spst5g00636 307 SMART c2h2final6 191 223 IPR013087 -
Spst5g00636 307 Pfam Zinc finger, C2H2 type 144 163 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00636 Spst-Chr5 5485587 5488515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00636 7 297 C2H2 Transcription Factor Family AT1G08290 57.522 2.15e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst5g00636 zf-C2H2_6 0.00013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00636 - - gmx:100819306 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00636 5 5485587 5488515 Spst5g00636 5 5485587 5488515 ECH
Spst5g00636 5 5485587 5488515 Spst11g01202 11 36348008 36350700 PCT