Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00625 ATGATAAATCAACCAAGAGTTTCAGGTTTTGAGTCTGTAAACTGCCTGATAGAAGATATGAAGGTGGTGGCTGCTTATTTGCTTGCAGTGTTGGGAGGGAACCCATCCCCTTCTGCCACTGATATCAAACACATCCTTAGCGCAGTTGGAGCTGATGCGGAGGAGGACTTGATTGAGTTGCTCTTAACTGAAGTCAAGGGCAAAGACTTCAATGAGCTACTCGCTAGTGGAAGTGAAAAGATGTCTGCAGTGTCTGGTGGTGGTGGTGGCGCGGTTGCTGTCGCTGCTGCACCAGCTGGAGGAGCCGGTGGTGCTGCCCCTGCTGCTGAAGCAAAGGAAGAAAAGAAAGTGGAAGAGAAGGAGGAGTCCGACGATGATATGGGTTTCAGTTTGTTCGACTAA 402 0.495 MINQPRVSGFESVNCLIEDMKVVAAYLLAVLGGNPSPSATDIKHILSAVGADAEEDLIELLLTEVKGKDFNELLASGSEKMSAVSGGGGGAVAVAAAPAGGAGGAAPAAEAKEEKKVEEKEESDDDMGFSLFD 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00625 133 Hamap 50S ribosomal protein L12 [rpl12]. 21 133 IPR027534 GO:0003735|GO:0005840|GO:0006414
Spst5g00625 133 CDD Ribosomal_P2 20 133 IPR044076 GO:0002182|GO:0003735|GO:0022625
Spst5g00625 133 MobiDBLite consensus disorder prediction 109 123 - -
Spst5g00625 133 Gene3D - 19 78 IPR038716 -
Spst5g00625 133 FunFam 60S acidic ribosomal protein P2 17 78 - -
Spst5g00625 133 MobiDBLite consensus disorder prediction 99 133 - -
Spst5g00625 133 Pfam 60s Acidic ribosomal protein 36 132 - -
Spst5g00625 133 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 20 133 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00625 Spst-Chr5 5351063 5353862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00625 20 133 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 61.404 4.64e-26 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00625 K02943 - gmx:100791682 128.642