Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00624 ATGAATTTGTTTAGTTGTTCTTCCTCGTTCAATTACACTGCTGTGCTGCGTTTGAAGATGGAGGAACACGAGAATGGCGCCAACGCAAGCGAAGAGGAACAGTTGATAGGCCCGGGCCCGGCCCCTCGGGCTCGGCCCAAGCGACCCCTTCAGTTCGAGCATGCCTACCTCGACGCGTTACCCTCCGCCAACATGTCAGTTTTTGCGCCAAACATCCTAGTTTTTGAATTAGGGTACGAGAAAAGTTATATGCACCGTGATGTGGTTACGCATGTCGCTGTTTCAGCTGCGGATTTTTTCATCACTGGAAGTTCCGATGGGCATTTGAAGTTTTGGAAGAAAAAGCCTATTGGTATTGAGTTTGCCAAACACTTCAGATCTCATCTTGGTCCAATTGAAGGTCTATCCGTTAGTATTGATGGTCTGCTTTGCTGCACAATATCAAATGACCGCTCTGTAAAAATATATGACGTAGTCAACTTTGACATGATGGTCATGATTCGCTTGCCGTATATTCCTGGTGCTGTTGAATGGGTTTACAAACAAGGGGATGTCAAAGCTAAGCTTGCCATTAGTGATAGGGACTCATCTTTTGTGCACATATATGATGCACGATCTGGTTCAAATGATCCCATCATTTCCAAAGAGATACATATGGGTCCTATCAAAGTTATGAAGTACAATCCTGTATGTGATTCTGTACTTTCGGCAGATGCAAAGGGGATAATTGAATACTGGAGTCCTGCAACACTTCAATTCCCAGAGGAAGAGGTCAATTTTAAACTGAAAAGTGATACTAACCTCTTTGAAATTGCAAAATGCAAGACTTCTGTTTCAGCTATTCAGGTAAGTCCAGATGGTAAACAATTTTCCATTACATCACCTGATCGAAGGATTCGTGTGTTTTGGTTCAGAACTGGTAAATTAAGGCGGGTTTATGATGAATCTCTGGAGGTTGCTCAAGATCTCCAAAGAAGTGATGCTCCATTATACCGGTTGGAAGCTATTGATTTTGGTCGAAGAATGGCTGTTGAGAAGGAAATAGAAAAGACAGAAAGTGCACCACTTCCAAATGCAGTCTTTGACGAAAGTTCCAATTTTCTTATATATGCAACCTTGCTTGGGATAAAAATAGTTAATCTGCACACCAATAAAGTTGCTCGAATACTTGGAAAGGTGGAGAATAATGATAGGTTCTTAAGAATAGCTTTATATCAAGGTGATCGGGGTAGCAAAAGAGTAAGAAAGATCCCTTCAGCAGCTGCAAATGCTAATGAGAGCAAGGAGCCTTTGACAGATCCCACACTCCTGTGTTGTGCCTTCAAAAAGCACAGAATATATTTATTCAGTCGAAGAGAACCAGAGGAGCCTGAAGATGCAACTAAAGGAAGAGATGTGTTCAATGAAAAACCTCCTGCTGATGAACTTTTGGCAGTTTCAGATATTGGAAAGTCAGTTACAACATCGCTTCCTGACAACGTGATTCTACATACCACAATGGGTGATATTCACATGAAATTATATCCCGAGGAATGTCCCAAAACTGTGGAGAATTTCACAACTCACTGCCGAAATGGCTATTATGACAATCTTATTTTTCATAGGGTCATCAAAGGCTTCATGATACAAACAGGAGATCCTTTAGGAGATGGCACTGGTGGGCAATCTATTTGGGGAAGAGAATTTGAGGATGAATTTCATAAAAGCTTGAGGCATGATAGACCGTTCACAGTATCAATGGCAAATGCGGGCCCAAATACAAATGGTTCTCAGTTCTTTATCACCACAGTAGCTACACCATGGTTAGACAACAAGCACACTGTATTTGGTAGAGTTGCAAAGGGAATGGATGTTGTACAGGGTATAGAAAAGGTGAAGACAGACAAGACAGACAAGCCATATCAAGATGTTAAAATTCTAAATGTCACTGTACCAAAGTCTTGA 1944 0.4151 MNLFSCSSSFNYTAVLRLKMEEHENGANASEEEQLIGPGPAPRARPKRPLQFEHAYLDALPSANMSVFAPNILVFELGYEKSYMHRDVVTHVAVSAADFFITGSSDGHLKFWKKKPIGIEFAKHFRSHLGPIEGLSVSIDGLLCCTISNDRSVKIYDVVNFDMMVMIRLPYIPGAVEWVYKQGDVKAKLAISDRDSSFVHIYDARSGSNDPIISKEIHMGPIKVMKYNPVCDSVLSADAKGIIEYWSPATLQFPEEEVNFKLKSDTNLFEIAKCKTSVSAIQVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTESAPLPNAVFDESSNFLIYATLLGIKIVNLHTNKVARILGKVENNDRFLRIALYQGDRGSKRVRKIPSAAANANESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLAVSDIGKSVTTSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVAKGMDVVQGIEKVKTDKTDKPYQDVKILNVTVPKS 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00624 647 FunFam Peptidylprolyl isomerase domain and WD-repeat protein 1 79 342 - -
Spst5g00624 647 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 528 545 IPR020892 GO:0003755|GO:0006457
Spst5g00624 647 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 604 619 IPR002130 GO:0000413|GO:0003755
Spst5g00624 647 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 576 591 IPR002130 GO:0000413|GO:0003755
Spst5g00624 647 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 533 545 IPR002130 GO:0000413|GO:0003755
Spst5g00624 647 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 507 522 IPR002130 GO:0000413|GO:0003755
Spst5g00624 647 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 591 603 IPR002130 GO:0000413|GO:0003755
Spst5g00624 647 SMART WD40_4 118 157 IPR001680 GO:0005515
Spst5g00624 647 SMART WD40_4 264 303 IPR001680 GO:0005515
Spst5g00624 647 SMART WD40_4 208 247 IPR001680 GO:0005515
Spst5g00624 647 SMART WD40_4 76 113 IPR001680 GO:0005515
Spst5g00624 647 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 489 643 IPR044666 -
Spst5g00624 647 FunFam Peptidylprolyl isomerase domain and WD repeat-containing 1 475 645 - -
Spst5g00624 647 SUPERFAMILY Cyclophilin-like 491 644 IPR029000 -
Spst5g00624 647 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 490 644 IPR002130 GO:0000413|GO:0003755
Spst5g00624 647 SUPERFAMILY WD40 repeat-like 87 310 IPR036322 GO:0005515
Spst5g00624 647 Gene3D - 79 469 IPR015943 GO:0005515
Spst5g00624 647 Gene3D - 482 647 IPR029000 -
Spst5g00624 647 CDD cyclophilin_WD40 495 642 - -
Spst5g00624 647 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 494 644 IPR002130 GO:0000413|GO:0003755
Spst5g00624 647 ProSiteProfiles Trp-Asp (WD) repeats profile. 82 113 IPR001680 GO:0005515
Spst5g00624 647 Pfam WD domain, G-beta repeat 89 113 IPR001680 GO:0005515
Spst5g00624 647 Pfam WD domain, G-beta repeat 123 157 IPR001680 GO:0005515
Spst5g00624 647 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00624 Spst-Chr5 5342364 5349636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00624 494 644 U-box Gene Family AT5G67530 46.358 1.72e-40 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00624 K12736 - gmx:100792207 1201.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00624 5 5342364 5349636 Spst5g00624 5 5342364 5349636 ECH