Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00620 ATGGATGTAACCATGAAAAATGTTGAGAGCGAATCTTCTTATTACTACTATTCCACTTCATCACCATCATCCACTTCTTCGCAGAGTCAACTCTGCAACCAGAATTCTCCATCGGATAACTCATCATCGCATGCACAAGCAACAAACCCAGCGTTGAGATCTCACAAGAGGAAAGCCGGGAGAAAGAAGTTCCGAGAGACACGCCATCCAGTGTACAGAGGAGTTCGTCAGAGAAACGGTGAGAAATGGGTGTGTGAAATCCGTGAACCGAACAATAAAGCAAGGATATGGCTTGGGACACACTCTACGCCGGAAATGGCAGCTAGGGCACATGACGTGGCTGTCCTAGCACTTAACGGCACCTCCGCGGTGTTCAATTTTCCTGATGCGGTTTCTCTTCTTCCAGTTGCAAAGTCATCTTCAGCTGCAGATATTAGACTAGCTGCAGCACAAGTTTGCAATGATTTTGTACCAACCAACCCTTCTTCAACTGATTCAAGGGTTGCAATTGAAACTAACCATTGTTCGGTGGAGGGTGTTGAAGATTTTGCCGTGACAGTGAATAACGATGATGAGTCCAACAAATCAGTGTTTTTTGATGAAGAGGCTCTTTATAACATGCCAGGCTTGTTAGATAGTATGGCAGAGGGTCTTCTCGTTACTCCACCTTCAATGAAGAGATTTGATTGGGACGAGGTTGACTGTGAAACAGACCTCACTCTCTGGACATAA 732 0.4522 MDVTMKNVESESSYYYYSTSSPSSTSSQSQLCNQNSPSDNSSSHAQATNPALRSHKRKAGRKKFRETRHPVYRGVRQRNGEKWVCEIREPNNKARIWLGTHSTPEMAARAHDVAVLALNGTSAVFNFPDAVSLLPVAKSSSAADIRLAAAQVCNDFVPTNPSSTDSRVAIETNHCSVEGVEDFAVTVNNDDESNKSVFFDEEALYNMPGLLDSMAEGLLVTPPSMKRFDWDEVDCETDLTLWT 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00620 243 ProSiteProfiles AP2/ERF domain profile. 71 128 IPR001471 GO:0003700|GO:0006355
Spst5g00620 243 MobiDBLite consensus disorder prediction 15 50 - -
Spst5g00620 243 SMART rav1_2 71 134 IPR001471 GO:0003700|GO:0006355
Spst5g00620 243 CDD AP2 72 130 IPR001471 GO:0003700|GO:0006355
Spst5g00620 243 FunFam Ethylene-responsive transcription factor 2 70 129 - -
Spst5g00620 243 Gene3D AP2/ERF domain 71 129 IPR036955 GO:0003700|GO:0006355
Spst5g00620 243 MobiDBLite consensus disorder prediction 54 69 - -
Spst5g00620 243 SUPERFAMILY DNA-binding domain 71 129 IPR016177 GO:0003677
Spst5g00620 243 Pfam AP2 domain 70 120 IPR001471 GO:0003700|GO:0006355
Spst5g00620 243 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Spst5g00620 243 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Spst5g00620 243 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 21 242 IPR045277 GO:0003700
Spst5g00620 243 MobiDBLite consensus disorder prediction 15 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00620 Spst-Chr5 5310246 5310977 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00620 24 243 AP2-EREBP Transcription Factor Family AT4G25470 42.986 1.44e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst5g00620 AP2 4.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00620 - - vra:106758293 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00620 5 5310246 5310977 Spst5g00620 5 5310246 5310977 ECH
Spst5g00620 5 5310246 5310977 Spst11g01228 11 36671477 36672124 PCT