Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00617 ATGACTTTTGAGATCCAATCCCCTTTTTCATTTCAATCTTCATCTCCCATTTCCCAATCATCATCATGCACACCACCTAATGATGATAACACTAACCTATTTTCACAACCTTTAGTGCATGCACAATTTGCAGTATCACACAAAAGGAAAGGGGGGAGAAAGAAGTTCAAGGAAACTAGACACCCCATTTATAGGGGTGTCCGACAAAGGAAGGGAAAGTGGGTTTGTGAGCTTAGGGAACCCAAGAAGACCACTAGGATTTGGTTAGGGACATACCCTACACCTGAAATGGCAGCTAGGGCACATGATGTGGGTGCCCTAGCCATTAGGGGCGCCTCAGCGATTCTAAACTTTCCAAACTCAGCTTCTCTTCTTCCACTCGTTAACTCCTCTTCACCTAAAGAAATTCGAGCTGCTGCAGTAGAAGCTGCCGAGAGTTTCAGACCAATCACCCCTTCTCATCACCAGAAAACTAGTCGCAAAGCTAAGTGCAGAAGAGTTAAAAAGGTTCCACCAATGGAGGAAAAGACGCAGGAAACAGTTCTGGACTCGTCCATGAATAGCATGCACGATTTGGATCGTGAAAATTGTGATTTTATCAACAGTGGCTCGGAGAAAAACATTTCTGATTTGTCTTCAACTGTGTTCTTCGACGAGGAGGCATTGTTTAACATGCCGAGTCTCTTGGATAGAATGGCAGAGAGTTTATGTCTTTTTCCACTTCCTTCAGTGGATTATTGGGACGATCAATCTTATTTCACATACTTCAATTTATGGACTGATTGA 786 0.4326 MTFEIQSPFSFQSSSPISQSSSCTPPNDDNTNLFSQPLVHAQFAVSHKRKGGRKKFKETRHPIYRGVRQRKGKWVCELREPKKTTRIWLGTYPTPEMAARAHDVGALAIRGASAILNFPNSASLLPLVNSSSPKEIRAAAVEAAESFRPITPSHHQKTSRKAKCRRVKKVPPMEEKTQETVLDSSMNSMHDLDRENCDFINSGSEKNISDLSSTVFFDEEALFNMPSLLDRMAESLCLFPLPSVDYWDDQSYFTYFNLWTD 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00617 261 CDD AP2 62 121 IPR001471 GO:0003700|GO:0006355
Spst5g00617 261 SMART rav1_2 63 125 IPR001471 GO:0003700|GO:0006355
Spst5g00617 261 SUPERFAMILY DNA-binding domain 63 121 IPR016177 GO:0003677
Spst5g00617 261 MobiDBLite consensus disorder prediction 1 31 - -
Spst5g00617 261 ProSiteProfiles AP2/ERF domain profile. 63 119 IPR001471 GO:0003700|GO:0006355
Spst5g00617 261 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Spst5g00617 261 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Spst5g00617 261 Gene3D AP2/ERF domain 63 120 IPR036955 GO:0003700|GO:0006355
Spst5g00617 261 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 14 259 IPR045277 GO:0003700
Spst5g00617 261 Pfam AP2 domain 62 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00617 Spst-Chr5 5289646 5290431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00617 15 246 AP2-EREBP Transcription Factor Family AT5G51990 42.735 3.60e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst5g00617 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00617 - - vum:124831015 410.609