Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00600 ATGTTTGCACACTCCACCACTGCATCACCACTCCCTTCACCTTCTTCACTCTTCCCTGACCTCACTGAATTCGAGACCCTCTCCCAACTCAACAACTCTGACACCAATTACTTCAACAATAACAGTAACTGTAGCAGTGGCTATAGCAGTTATGGTGGCTCCCCCACTTCTGCGGCCACTCCCAACTTTATGCAGAGGAGTGTCAGCAGCAATTCCTTCAACTACAACAACAATGCCACCCACCACCCTCTTTCTGCTTTCTTCGCCGAATTGCTCGACTCCCACCATGCTCCTGTTAGGAAAGTTTGCAGCACTGGTGATCTCCAGAGAATTAATGGAATTCAACATAATCATCACTCGGATAGTCCGTTATCAAGCGAAAGTAGTATGATCATAGAAGGTATGAACAGAGCCTGTAGATATAGCCCAGAGGAGAAGAAGGTGAGAATTGAGAGATACAGAAGCAAGAGGAACCAGAGGAACTTCAACAAGAAAATTAAGTATGCTTGCAGAAAAACATTAGCAGACAGCAGGCCACGGATTAGAGGAAGGTTTGCAAGGAATGATGAAATTGACAAGAACAGTGCAATTCAGTGGAGCCAAACCGGTGGAGAGGAAGAGGATGAAGAAGATGAGAATTGGTTCACTGTCTTAGATTCCTTAGTTGCTGCAAATTTTGCTCAGGAGTCTCAAGGAAGTTGTTCCTCCTATGGTCTATTCTATTAG 726 0.449 MFAHSTTASPLPSPSSLFPDLTEFETLSQLNNSDTNYFNNNSNCSSGYSSYGGSPTSAATPNFMQRSVSSNSFNYNNNATHHPLSAFFAELLDSHHAPVRKVCSTGDLQRINGIQHNHHSDSPLSSESSMIIEGMNRACRYSPEEKKVRIERYRSKRNQRNFNKKIKYACRKTLADSRPRIRGRFARNDEIDKNSAIQWSQTGGEEEDEEDENWFTVLDSLVAANFAQESQGSCSSYGLFY 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00600 241 ProSiteProfiles CCT domain profile. 146 188 IPR010402 GO:0005515
Spst5g00600 241 Pfam CCT motif 148 188 IPR010402 GO:0005515
Spst5g00600 241 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 37 217 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00600 Spst-Chr5 5124743 5126760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00600 142 195 C2C2-CO-like Transcription Factor Family AT5G15850 46.296 2.85e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst5g00600 CCT 8.6e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00600 - - gmx:102661609 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00600 5 5124743 5126760 Spst5g00600 5 5124743 5126760 ECH
Spst5g00600 5 5124743 5126760 Spst11g01443 11 38865448 38867680 PCT