Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00581 ATGTCTAGTCAGTTGGTGGAGAAGAAGCAAAGGCCTCATCCAGAACAAGCTCTGAAATGCCCAAGATGTGACTCCACCAGCACAAAATTTTGCTACTACAACAATTATAGTCTTTCTCAGCCAAGATATTTCTGCAAGTCTTGTAGGAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGAGGAGGATGTCGAAAGAAGAGATCATCGTCGTCGTCATCATCATCATCAACAACTTTAAAGAGGGATCGTGATCAGGCATTCACACCCAATCTTAACCCAAACACTACATTCCCTCAGTTGTCTTATGACTCCAATGACTTCACTCTAGCATTAGCTAATTTTCAAAAACAATCATGTGGGCAATTGGGATACAACGACCATGGTCATTCTATTTTGGGAAACCCCACAGGCTCCTTTTGTGACATTCTTAGCAATTCAGGCATGAATTCCTCCTCATCAAACCCTTCATTTTTGGACGCAATTAGAACTGGGTTCCTTGAAACTCAAAATCATCTTCAGAATTTGTATCATGTGTATGGAAATGGAGACATGGGGGAGGTGGATAATGGCAATTCTGGTGGCGTTGGGGTCAGTGTTGAGATGATGCTCCCTTATGATCAAGTGGTGGGCAATGCAACCACTCAATCAGTGAATGCACTAATGAAGCATGAACAGTGTGGTGGTAGTGAACAAAGTGAAAGGAAGGTATTGGGGGGTTTCCCTTGGCACCTTAATGCATACACAAACATTGATGAAATTGATCCAGGAAGAGCAATTGCAAGTTGGAACAGTTTCACATCTTCTTGGCATGAGCCTCTCCATAGTCCCCTAATGTAG 849 0.4299 MSSQLVEKKQRPHPEQALKCPRCDSTSTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKKRSSSSSSSSSTTLKRDRDQAFTPNLNPNTTFPQLSYDSNDFTLALANFQKQSCGQLGYNDHGHSILGNPTGSFCDILSNSGMNSSSSNPSFLDAIRTGFLETQNHLQNLYHVYGNGDMGEVDNGNSGGVGVSVEMMLPYDQVVGNATTQSVNALMKHEQCGGSEQSERKVLGGFPWHLNAYTNIDEIDPGRAIASWNSFTSSWHEPLHSPLM 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00581 282 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 8 167 IPR045174 GO:0003700|GO:0006355
Spst5g00581 282 MobiDBLite consensus disorder prediction 63 103 - -
Spst5g00581 282 MobiDBLite consensus disorder prediction 69 103 - -
Spst5g00581 282 ProSiteProfiles Zinc finger Dof-type profile. 18 72 IPR003851 GO:0003677|GO:0006355
Spst5g00581 282 Pfam Dof domain, zinc finger 16 72 IPR003851 GO:0003677|GO:0006355
Spst5g00581 282 ProSitePatterns Zinc finger Dof-type signature. 20 56 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00581 Spst-Chr5 4837977 4838825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00581 16 282 C2C2-Dof Transcription Factor Family AT2G28510 38.849 8.02e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst5g00581 zf-Dof 6.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00581 - - gmx:778104 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00581 5 4837977 4838825 Spst5g00581 5 4837977 4838825 ECH
Spst5g00581 5 4837977 4838825 Spst2g02296 2 22237773 22238886 PCT