Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00577 ATGGAGAGTGACACAAACACCCTTACTTCCTCTCCCACGTTTTCTCACTCCTCTAATACCCCTTCTTCTTCCCCTCCCCAAGTTGTCATGAGCCCTTGTGCTGCGTGCAAAATCCTTAGGCGAAGATGTGTTGAGAAATGTGTCTTGGCACCTTATTTTCCTCCCACTGAACCTGCCAAGTTTACCACTGCTCACCGAGTCTTTGGTGCCAGCAACATCATCAAGTTCTTACAGGAACTTCCAGAGTCTCAGAGAGCTGATGCAGTGGCGAGCATGGTTTATGAGGCTGGTGCAAGAATAAGAGACCCTGTATATGGATGTGCAGGTGCAATTTGCCAGCTCCAGAAACAAGTCAATGAACTTCAAGCACAGTTAGCAAAGGCACAAGCTGAGGTTGTAAACATGCAATTCCAACAAGCCAATCTCGTGACCCTAATTTGCATGGAAATGTCACAGACTCCACAGGAATCTCCACAACAATCCACGGACAATTTCATCACAAGTCCTTCCCACAGCAGTGGTTATCAGAACAACCTCAATTTCTTTGAGGACAACACCAACCTAAACTCTTTGTGGGAGCCTCTTTGGACATGA 594 0.4663 MESDTNTLTSSPTFSHSSNTPSSSPPQVVMSPCAACKILRRRCVEKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPESQRADAVASMVYEAGARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAEVVNMQFQQANLVTLICMEMSQTPQESPQQSTDNFITSPSHSSGYQNNLNFFEDNTNLNSLWEPLWT 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00577 197 ProSiteProfiles LOB domain profile. 31 132 IPR004883 -
Spst5g00577 197 MobiDBLite consensus disorder prediction 1 28 - -
Spst5g00577 197 Pfam Lateral organ boundaries (LOB) domain 32 129 IPR004883 -
Spst5g00577 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 31 164 - -
Spst5g00577 197 Coils Coil 111 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00577 Spst-Chr5 4810480 4811670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00577 27 197 AS2 family AT1G07900 67.816 1.50e-80 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst5g00577 LOB 2.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00577 - - gmx:100819336 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00577 5 4810480 4811670 Spst5g00577 5 4810480 4811670 ECH
Spst5g00577 5 4810480 4811670 Spst11g01411 11 38486450 38488003 PCT