Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00574 ATGGATTTAGTAGCTAGTTGCAAGGAAAAATTGCAATATTTTCGGATTAAAGAGCTCAAAGATGTGCTCACTCAGTTGGGACTTTCAAAGCAGGGAAAGAAGCAGGATCTTGTTGATAGGATATTATCTATTCTTTCAGAGGACCAAGGGTTTGTCATTGTGTTTTTGGAGCACAATTTAATATTCAATCCAGTCATCAGCTCAGCTGAAGTTCTAGCTCAATGGTTAATATTGGTCAACCGTATTGGAAAAATTGAATGGAAAACATCGTGGATGATCCTGGGTGGAAGAGGCACTATGGGTGTGAGTCACAAGAAACCTATTTTAGCCATGATTGGCATCAATTTTCTTTACAAGGGACGCCCACCTTTATCTGGCAACATATTCTGGCCAGCTGTTACAGGAGGGCATCCACAACTTAAGCAGCCTCTGCTCTCCATAGTTTCCAATCATCCTCAGACCTGCAGCAATTTTCTGGAAAACCTCAGCCAGTCTTTCATCCCACTACCTGCTGTAGCATTTTCAGTTCAGCTGCTTTGTCTTCTTTTTGGGATTGACAAGTATGTGGTCAACAATTACTACACAAGCCTTTATCCCACTAGGGATGGTGGGTTACACAGCAATGAACCTCAGCCCAGAGTAAAAGATGACAAAGTTGGAAAGCAACGGGTGGCCAAATTAGTGGAGGACACATATAGAAAATTGCAGGTATCTGGGGCCATTGACCCATCATCAAAGGGACAAGGTGCCTCTGACAGTAGTAATGTGAAAATTAAAGGTGAAATTGAGGATTCCTTTCAATCAGATACAAAGATTCGCTGTCTATGTGGAAATGTATTGGATACAGAGCCATTGGTCAAGTGTGAAGATACAAGATGTCATGTGTCGCAGCACATCAACTGTGTTATTATTCCAGAGAAACCTATGGATGGAAGCACACATGTTCCTGATAAATTCTATTGTGAAATATGTCGACTTGATCGAGCAGACCCGTTCTGTGTTTCAGTGACACACCTTTTGTTTCCGGTGAAGCTGACCACAACCAATATTCCCACTGATGGAACCAACCCAGTTCAGAGTGTGGAAAGAACGTTTCAACTCACAAAGGCAAACAAGGAATTGGTATCAAAACCAGAATATGATGTTCAGGCTTGGTGTATGCTTTTGAACGACAAGGTTTCATTCAGGATGCAATGGCCACAATATACAGATCTAAAGGTCAATGGTCTTCCTGTTCGTGCAATTAACAGACCTGGTTCACAGTTGCTTGGGGCTAATGGTCGTGACGCTGGTTCAAATATCACACCATATTCAAAGGACGGAATTAATAGGATTTCCTTAACAGTGTTGGATGCTCGCATATTCTGTTTAGGGGTCCGTATTATTAAAAGGCTCACCATGCCAGAGTCAAGGTTGCTTTCCAAACTTGCCTTACTTTTCAATTATAGTATTCTGGCTGACTTTTGGTTCCTTCAATCCAAGCTTATTGGAACAGTCAAGTTTGATGTTCTAAGCATGATTCCAGAGGAGTCTGATGGTGAGCGTTTCGAAGATGCTCTTGCACGTGTTTGCTGTTGTGTTGGGGGCGGAAATGCAAATGATAATGCTGATAGTGATAGTGATTTGGAAGTGGTTTCAGATACTTTTAGCATCAATCTCCGTTGCCCTATGAGTGGTTCAAGAATGAAGATTGCAGGAAGATTCAAACCTTGTGTTCACATGGGCTGTTTTGATCTTGAAGTTTTTGTTGAAATGAATGAACGATCAAGGAAGTGGCAATGCCCTATATGCCTTAAAAATTATGCTTTGGAGAATATCATTATTGACCCGTACTTCAATCGCATCACTTCTCTGATGAAAAATTGTGGAGAAGAGATTACAGAGGTTGAGGTGAAGCCTGATGGTTTTTGGCGTGTCAAGGTTAAGAATGAAAGTGAACGCCGGGAGTTGGGGACTCTTGCTCAATGGCACCGTCCTGATGGATCCCTCTTTGTTTCTACTGATGAAATAAAGAGAATGGAAAGTTTAAGGCTCAAACAGGAAGGTGTTTCAGATGGTCCTATTGGTTTAAAGCTTGGCATCAGGAAGAATAGTAATGGTGTTTGGGAAGTCAGCAAACCTGAGAATACAAACACCTCTTCTGGTATTAATAGATTGAATGAGGATTTTAAAAATGATGAACATGTTATTATTCCAATGAGCAGCAGTGACACTGGAAGTGGCCGGGATGAAGATGATCGAAGTGTAAATCAGGGTGTTGGTGGGCATATTGATTTTTCTACTGCCAATGGTATTGAGATGGATTCTGTGTTTAACAATAATATTGATTCAGCTTATGGATATTCTGTTCATAATGCATCTGCTCCAATGGGTGATGCAGAAGTTATTATTCTTAGTGATTCAGAAGAAGAAAACGATGTGATGATGTCTCCTACTCCTATAACTGGGTACAATAATAATCAAACTAGTGCTCCAGTTGATGTTTACTCCGTGCTGGAGCCTGTAATTATTGATTCATATACGGAAGATCAGAACCCTGGTGGAAATGCAGGCTTGGGAGTTTTTAATAATCATCCCAGTGAAGATGATTTTGGGATGTCCTCCCTCTGGCCATTGCAATCTGGAACTCCAGCAGTTTCTGGATTCCAATTATTTAGCTCTGAAGTGGAGGATGTATCAGATACGTTGGCTGGTTTGCAGAATGGTAATATGAATTGCTCGTCATCACTGCATGGTTATATGTTGGCCCCAGATAATGTTATGGGATCTAGCACTCTTGCACCAGAATCATCAGTAGTGCGACCTGATGATGATTTACATGGTGGCTTGGTTGACAATCCTCTGGCATTTCCCAGAGAAGATCCCTCCCTTCAGATTTTTCTTCCTACAAAACCAGCAGAATCATCTATGCAGCATGAATTGCGTGATCATGCAGATGTATCAAACGGTGTCTTCACTGAGGATTGGATCTCTCTTAGTCTTGGAGGTGGTGCCACTGGCAGTAATGGTGACACTTCAACGGCAAATGGATTGAATTCCAGATCGCAAATTACATCCAGAGAAGATGCCATAACTTTGACAGATACTGCTCCTTTACTTCTTGGTATCAATGATGTTAGATCTGACAAGTCAAGTAGGAAAAGGTCGGAATCAGATAGCCCTTTCTCATTTCCCCGCCAAAAACGTTCAAAACTGAAGAAAGTTGAGCAGCATTTTTGGTCCTCAGGAAATGGAAGATGA 3240 0.4148 MDLVASCKEKLQYFRIKELKDVLTQLGLSKQGKKQDLVDRILSILSEDQGFVIVFLEHNLIFNPVISSAEVLAQWLILVNRIGKIEWKTSWMILGGRGTMGVSHKKPILAMIGINFLYKGRPPLSGNIFWPAVTGGHPQLKQPLLSIVSNHPQTCSNFLENLSQSFIPLPAVAFSVQLLCLLFGIDKYVVNNYYTSLYPTRDGGLHSNEPQPRVKDDKVGKQRVAKLVEDTYRKLQVSGAIDPSSKGQGASDSSNVKIKGEIEDSFQSDTKIRCLCGNVLDTEPLVKCEDTRCHVSQHINCVIIPEKPMDGSTHVPDKFYCEICRLDRADPFCVSVTHLLFPVKLTTTNIPTDGTNPVQSVERTFQLTKANKELVSKPEYDVQAWCMLLNDKVSFRMQWPQYTDLKVNGLPVRAINRPGSQLLGANGRDAGSNITPYSKDGINRISLTVLDARIFCLGVRIIKRLTMPESRLLSKLALLFNYSILADFWFLQSKLIGTVKFDVLSMIPEESDGERFEDALARVCCCVGGGNANDNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCVHMGCFDLEVFVEMNERSRKWQCPICLKNYALENIIIDPYFNRITSLMKNCGEEITEVEVKPDGFWRVKVKNESERRELGTLAQWHRPDGSLFVSTDEIKRMESLRLKQEGVSDGPIGLKLGIRKNSNGVWEVSKPENTNTSSGINRLNEDFKNDEHVIIPMSSSDTGSGRDEDDRSVNQGVGGHIDFSTANGIEMDSVFNNNIDSAYGYSVHNASAPMGDAEVIILSDSEEENDVMMSPTPITGYNNNQTSAPVDVYSVLEPVIIDSYTEDQNPGGNAGLGVFNNHPSEDDFGMSSLWPLQSGTPAVSGFQLFSSEVEDVSDTLAGLQNGNMNCSSSLHGYMLAPDNVMGSSTLAPESSVVRPDDDLHGGLVDNPLAFPREDPSLQIFLPTKPAESSMQHELRDHADVSNGVFTEDWISLSLGGGATGSNGDTSTANGLNSRSQITSREDAITLTDTAPLLLGINDVRSDKSSRKRSESDSPFSFPRQKRSKLKKVEQHFWSSGNGR 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00574 1079 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 530 639 IPR013083 -
Spst5g00574 1079 Gene3D SAP domain 1 52 IPR036361 -
Spst5g00574 1079 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 211 839 - -
Spst5g00574 1079 MobiDBLite consensus disorder prediction 1040 1069 - -
Spst5g00574 1079 CDD SP-RING_Siz-like 552 601 IPR031141 -
Spst5g00574 1079 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 330 IPR013083 -
Spst5g00574 1079 MobiDBLite consensus disorder prediction 201 220 - -
Spst5g00574 1079 CDD PHD_Bye1p_SIZ1_like 273 324 - -
Spst5g00574 1079 SMART sap_9 11 45 IPR003034 -
Spst5g00574 1079 SUPERFAMILY FYVE/PHD zinc finger 266 328 IPR011011 -
Spst5g00574 1079 SMART PHD_3 273 325 IPR001965 -
Spst5g00574 1079 MobiDBLite consensus disorder prediction 1039 1079 - -
Spst5g00574 1079 SUPERFAMILY SAP domain 1 50 IPR036361 -
Spst5g00574 1079 Pfam MIZ/SP-RING zinc finger 551 599 IPR004181 GO:0008270
Spst5g00574 1079 Pfam SAP domain 13 42 IPR003034 -
Spst5g00574 1079 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Spst5g00574 1079 MobiDBLite consensus disorder prediction 732 751 - -
Spst5g00574 1079 ProSitePatterns Zinc finger PHD-type signature. 274 324 IPR019786 -
Spst5g00574 1079 ProSiteProfiles Zinc finger SP-RING-type profile. 538 621 IPR004181 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00574 Spst-Chr5 4744912 4766033 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00574 - K22403 gmx:100803144 1379.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00574 5 4744912 4766033 Spst5g00574 5 4744912 4766033 ECH
Spst5g00574 5 4744912 4766033 Spst11g01401 11 38383388 38394372 PCT