Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00573 ATGGGAGGTTTGGCAGCAGGAGGCAGTGGATTTATGGACTCTGAGGAGTCTATAAGATCATCCAAGGTCTTGCAAGGTCAAGAAAATTCAGGTTTTATGTCACTATATTATGGATGTGACACGGTAACTAAGCAGCCAGAATTTGATATCAGATCTCCAAGTCATCCTAATCTTGCATCAACTGGAGTGAGAAAGATTGCTGCTGCTGAGTTTATGAGGGTTCACCCTTCTAGTTATGCAGGCTTCACGGAAACTAACAGGTTTCCAAGGATCTTGCAAAGTCAAGAAATATGTCAATTTAGATCGCTGACAGGAAAGGCTGATTTAAACTTTGGTGCCTGGGGCAAACCCAGTGTCAATTGCACAAATTACAACCTGCATCAGGCAACCAAACCTAACTTTCACTCTCTAGGACCAGAAGTTATTCAAACTGCATATTTTCCTTATGGTGATATTCACAAAGTTGGACAAGGTAGCGGCACCGGCATGTTGTGCTCTAAACCCACCAATTTCCAAAGAGAGAGTGTCCCATTTAACTCTCCTTCCTCACAGTCAAGGATCATGAGAAATGAAGATGGACAGTCAGATGTTACAATCCCAAATGAGCAGAAGCTGCAGGACAATATTTCTGGTGCTTCTTCTTTAGGGGCGAACATGAGGATTCCAAATGATGACAATATCAAGGGGAAGGTAAATGCTTGTAAACTATTTGGATTTCCCTTGTCCGGGGAAACCACCACCCAAAATATACAGAACTCAGCTAAACGAAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGACTGAGCAGCTACAATGACCTGCTGATTGAACTAGAGAGACTATTTAGCATGGAAGGCCTTCTAATAGATCCTAACAAGGGATGGAGAATCCTGTACACTGACAGTGAAAATGACATTATGGTTGTGGGGGATGACCCGTGGCATGAGTTCTGCGATGTGGTATCGAAGATTCATATACATACACAAGAAGAAGTGGAGAAGATGACAATTGGGATGCTCAATGATGATACCCAGAGTTGTTTGGAACAGGCACCAGTGATGATTGAGGCTTCAAAGTCTTCCTCCGTGGGCCAGCCTGATTCTTCTCCAACAGTGGTTAGAATCTAG 1155 0.4329 MGGLAAGGSGFMDSEESIRSSKVLQGQENSGFMSLYYGCDTVTKQPEFDIRSPSHPNLASTGVRKIAAAEFMRVHPSSYAGFTETNRFPRILQSQEICQFRSLTGKADLNFGAWGKPSVNCTNYNLHQATKPNFHSLGPEVIQTAYFPYGDIHKVGQGSGTGMLCSKPTNFQRESVPFNSPSSQSRIMRNEDGQSDVTIPNEQKLQDNISGASSLGANMRIPNDDNIKGKVNACKLFGFPLSGETTTQNIQNSAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLIELERLFSMEGLLIDPNKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIHTQEEVEKMTIGMLNDDTQSCLEQAPVMIEASKSSSVGQPDSSPTVVRI 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00573 384 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 144 345 IPR044835 GO:0003677|GO:0006355|GO:0009725
Spst5g00573 384 FunFam Auxin response factor 251 345 - -
Spst5g00573 384 SUPERFAMILY CAD & PB1 domains 259 336 - -
Spst5g00573 384 Gene3D - 252 345 - -
Spst5g00573 384 ProSiteProfiles PB1 domain profile. 256 338 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00573 Spst-Chr5 4740079 4741521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00573 10 384 B3 DNA Binding Superfamily AT5G60450 46.736 2.57e-85 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Spst5g00573 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00573 - - gmx:100812909 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00573 5 4740079 4741521 Spst5g00573 5 4740079 4741521 ECH
Spst5g00573 5 4740079 4741521 Spst11g01396 11 38352678 38353272 PCT