Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00567 ATGTTGCGAGCCAAATTGGTATCATCGGCACTTGTTGATTCCCTTGGTCTCTCTCCTTTGTTAAGAGCAAGGTATTCTTTGATGGAGGGAGATCAACTGGGTTCTAATTACTCTTTTCCTCCTGGCTTCAGATTCCACCCTTCTGATGAAGAACTCATAGTTCATTACTTGCAAAACAAAATCAGTTCACGTCCACTTCCAGCATCTATTATAGCTGAAATAGATCTCTATAAGTATAACCCGTGGGAGCTACCCAATAAGTCTTTGTTTGGAGACGAAGAGTGGTATTTCTTCAGCCCAAGAGACAGAAAGTACCCTAATGGATTGAGGCCAAACAGGGCAGCAGCATCGGGATACTGGAAGGCAACAGGAACTGACAAGCCAATTCTTTCTTCTAGTGGATCAAAGCGCATAGGAGTGAAGAAAGCTCTGGTGTTTTACTCAGGTAGACCTCCTAAGGGAGCTAAGACGGATTGGATCATGAATGAATATAGATTGATTGAAACAACCACCAAATCCTCTCGGCTAAAAGGTTCCATGCGGTTGGATGACTGGGTACTATGCCGGGTTCGACATAAAGGCTACTCTTCGAAGATGTCATGTGAAAATCAAGAGAATCCTAGTGAATTAAACTTGTCAGCAAAACTACCAAGGAGTGAAGAATATCCTACAAACATGAACTGTCGGGCTGACATGATAACTGACTATCAATACAAAGACTATCAGATCATAGCTTCTATTCTTGTTGGTGCGCCAGTACCTCCCACTGCAAACATGCCAAATATGAGCTTCAAGGGCTGCAAAGCCACCAATCTAGTTTCAGTTTATGAAGATAGTTTCACTAAAGTGAATTCTCAAATGACAATTCCTTCTTTGGACAGTTACTTCAACCCACTGACAAGAAAATCTAATGAAGATGAACAGTTTGGAAATCTCATTTCTTTTAACAGGAAGTTCAACACTGAGAACAAAATGGACGAATCTTCTAGCAAGGTCTTGACAAGTAGAGAAGTGAACTGCTATAACCAAAACCAGTCTGAAGATGACATTTTCAGTGGCAACTCACCAGATACTGGCATCAATTTTCAAGAGCTAAATGAATTAGCCTTTACAGGAAGGTACTCTCAGTGA 1131 0.412 MLRAKLVSSALVDSLGLSPLLRARYSLMEGDQLGSNYSFPPGFRFHPSDEELIVHYLQNKISSRPLPASIIAEIDLYKYNPWELPNKSLFGDEEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKPILSSSGSKRIGVKKALVFYSGRPPKGAKTDWIMNEYRLIETTTKSSRLKGSMRLDDWVLCRVRHKGYSSKMSCENQENPSELNLSAKLPRSEEYPTNMNCRADMITDYQYKDYQIIASILVGAPVPPTANMPNMSFKGCKATNLVSVYEDSFTKVNSQMTIPSLDSYFNPLTRKSNEDEQFGNLISFNRKFNTENKMDESSSKVLTSREVNCYNQNQSEDDIFSGNSPDTGINFQELNELAFTGRYSQ 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00567 376 FunFam NAC domain-containing protein 72-like 48 198 - -
Spst5g00567 376 ProSiteProfiles NAC domain profile. 39 193 IPR003441 GO:0003677|GO:0006355
Spst5g00567 376 Gene3D NAC domain 48 196 IPR036093 GO:0003677|GO:0006355
Spst5g00567 376 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 38 306 - -
Spst5g00567 376 Pfam No apical meristem (NAM) protein 40 166 IPR003441 GO:0003677|GO:0006355
Spst5g00567 376 SUPERFAMILY NAC domain 35 193 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00567 Spst-Chr5 4604690 4607017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00567 32 204 NAC Transcription Factor Family AT1G69490 64.162 2.04e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst5g00567 NAM 3.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00567 - - vra:106759457 656.366