Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00565 ATGGCAGATCCAAATGCAGAAGTGATTGCCCTGTCGCCAAAGTCGCTGATGGCGACGAACCGGTTCATCTGCGAAGTGTGCAACAAGGGTTTTCAGAGAGACCAGAACCTGCAGCTGCATCGGCGAGGGCACAATCTGCCGTGGAAGCTGCGGCAGAGAACGAAGGAGGAAGTGAGGAAGAAGGTGTACGTGTGTCCAGAGAAGAGTTGCGTGCACCATGACCCTTGCAGAGCCCTGGGAGACCTCACTGGGATAAAAAAACACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGAAAAGTGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCATAACAAGATTTGTGGGACTAGACAGTACAAATGTGACTGTGGCACAATATTCTCCAGGAAGGACAGCTTTGTAACGCATAGAGCCTTTTGTGACGCTATGGTGGAACAAAGTGCGAGGCTTCCGGCAGTTTTATCAAACCTGGGAAACGAGATTTTGATGAATGCTCAAGCGCCGAGAGTAATGCCTCAGGGTTTACAATTGCACGGGTTTCATTCAGAGTTTGGCGGGCCAGGTCCTGAATCATTCATGGGGAATTTTGCAGATGCGGAACATGAACATAAGCTAAGGTTGCCGCTATGGCTAGACCAGACAAATCTTCAGCTTAATCATCCTCTTAGCGTTGTTCCAAGCAACTCAAGCGTATTCTCACAAGGAACAACCTTGCCTGAAACAAACAACCTGTTCGGGACATCATCGTCACAGGCACAGTGGACGAATTATCGATACCCAGAAGCATCTTTTACATGTGCCAATATCTCTATGCCTCATGGACTGAAGCTAGAGCAAGAAGAAAACAAAGGGGAGTTGTCGCATAGCGTGAGCTCTTTGTACCCAAGTCACATGGAATCTACAAGGATGAGTGGCAGTTCACCCTTCGACAACTCCAACTTTGGCTTGTTGGACCCGAACATGTCAAGCACGTCCAACAACAACCGGAGCAATGTGGTTGAAATTCAGAAGATATTCAAGCAAGCAAACCAGGGTGAAAACTTCAACCTCATGGTGAATTCCCAAGCAAGCAGCAACATGGGAGGTGGATTTTCCTTGAGTAGCAGCACGAAGAGTTTGGAGCATATGATGATGCCACGGATCGAAGAGTGGGAAAGTGGAGAAGCAGAAATAATGGAGAATCAAGTACATTCAAGTTCAAACACCAAAGAGCATTTAACCAAAGACTTCATGGGTGTGGGAGATGGATCATTAAGCAGGCAAATGGGGCCAGGAGTGATTGGGTGGGCATGCACAGTGAACAGGGAGCTATCACGTGATGAAATCGATATCATAGAGGCATCCCGTGAAGGATGTGGGGGCCATTGCTTCATGTTACGTTTTTACGATGATGCAATTTTACTGGCTACAGCGTCTCTTGTCGATGATGACCTACTTTTATTTGTTTTGAGTGACCTTTGGGAGGGCGTGAACTAG 1494 0.4739 MADPNAEVIALSPKSLMATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRTKEEVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHNKICGTRQYKCDCGTIFSRKDSFVTHRAFCDAMVEQSARLPAVLSNLGNEILMNAQAPRVMPQGLQLHGFHSEFGGPGPESFMGNFADAEHEHKLRLPLWLDQTNLQLNHPLSVVPSNSSVFSQGTTLPETNNLFGTSSSQAQWTNYRYPEASFTCANISMPHGLKLEQEENKGELSHSVSSLYPSHMESTRMSGSSPFDNSNFGLLDPNMSSTSNNNRSNVVEIQKIFKQANQGENFNLMVNSQASSNMGGGFSLSSSTKSLEHMMMPRIEEWESGEAEIMENQVHSSSNTKEHLTKDFMGVGDGSLSRQMGPGVIGWACTVNRELSRDEIDIIEASREGCGGHCFMLRFYDDAILLATASLVDDDLLLFVLSDLWEGVN 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00565 497 ProSitePatterns Zinc finger C2H2 type domain signature. 24 44 IPR013087 -
Spst5g00565 497 MobiDBLite consensus disorder prediction 292 313 - -
Spst5g00565 497 SMART c2h2final6 98 118 IPR013087 -
Spst5g00565 497 SMART c2h2final6 63 93 IPR013087 -
Spst5g00565 497 SMART c2h2final6 22 44 IPR013087 -
Spst5g00565 497 Gene3D Classic Zinc Finger 3 73 - -
Spst5g00565 497 SUPERFAMILY beta-beta-alpha zinc fingers 21 118 IPR036236 -
Spst5g00565 497 Pfam Zinc-finger double-stranded RNA-binding 22 44 IPR022755 -
Spst5g00565 497 Gene3D Classic Zinc Finger 76 155 - -
Spst5g00565 497 ProSiteProfiles Zinc finger C2H2 type domain profile. 22 44 IPR013087 -
Spst5g00565 497 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 2 426 IPR031140 -
Spst5g00565 497 MobiDBLite consensus disorder prediction 286 313 - -
Spst5g00565 497 FunFam protein indeterminate-domain 5, chloroplastic-like 76 155 - -
Spst5g00565 497 FunFam protein indeterminate-domain 12-like 1 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00565 Spst-Chr5 4593952 4596501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00565 1 155 IDZ Gene Family AT5G66730 85.161 9.95e-102 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst5g00565 zf-C2H2_jaz 8.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00565 K25870 - gmx:100815213 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00565 5 4593952 4596501 Spst5g00565 5 4593952 4596501 ECH
Spst5g00565 5 4593952 4596501 Spst11g01390 11 38296343 38299785 PCT