Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00559 ATGGGAGATTGTAAGAGTTTTTCATTTTCCAAAATGATGGGCTGCTGTGGTTGCTTCGGATTTATCAAAAAACAAAGACGGCGTCGGGCTAAACGTAGCATCAACAATCTTCTCTCCCATGGCCTGTTATATGATGGAGAAACTGAAGGTGATGAGTCGTGCAGTGGAGATGTTACTAGTTACGCCACCAGTGGAGATGATAATGAGGTGCAAGCTGTACGCAACCGTTCCGAGGATATTTTGAACTTTAGAGCGGAGCATGGCATGGTTTGTAGACCATTTCCTGTCAAGGAGACTTGCAAACTTGTTCGCTCAGAGGATGAAAATGGAAACAAGATGATAAATGAATATGTCCGAGAGTATAAAATTGGTTCTGGAAGCTATGGCAAAGTGGCCCTTTATCGAAGTCTTGCTGACGGAAAGCATTATGCAATTAAGGCCTTTCACAAGTCTCATTTACAAAAGCTTCGAGTTGCACCTTCTGAGACTGCCATGACTGATGTTCTACGGGAGGTACTGATTATGAAAATGGTGCAACATCCTAATATAGTGAATCTCATTGAAGTGATTGATGACCCTGAGTCAGATGACTTCTACATGGTACTTGAATATGTGGAAAGCAAATGGGTGTGTGAGGGTACAGGTCGTCCTTGTGCATTAGGTGAAGAGACTGCTAAGAAATACTTGCGTGATATAGTCTCAGGATTAACATATCTCCATGCTCATAATATAGTGCATGGGGATATAAAACCTGATAATTTATTGGTTACTCGTGATGGCACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGATGGCAACGATGAACTTCGTCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTTGTTTAGGCCTTACATATCATGGTAAAGCTTCTGACACGTGGGCAGTAGGAGTTACTTTGTACTGTATGATATTGGGTGAATACCCATTTCTTGGAGACACACTTCAAGACACATATGACAAAATAGTCAACGATCCTCTACTTCTGCCAGATGACATTAACCCCCAATTAAAGAACTTAATAGAAGGATTACTGTGCAAAGACCCAGAATTAAGGATGACATTGGGCGATGTTGCTGAGCATGTCTGGGTTATTGGAAATGATGGGCCAATTCCTGGGTACTTATGTTGGTGCAAACGCAAGAGCCTGGTGACTGAAGATCTTGATGGGAGCAATACACTTGTTTGA 1230 0.4244 MGDCKSFSFSKMMGCCGCFGFIKKQRRRRAKRSINNLLSHGLLYDGETEGDESCSGDVTSYATSGDDNEVQAVRNRSEDILNFRAEHGMVCRPFPVKETCKLVRSEDENGNKMINEYVREYKIGSGSYGKVALYRSLADGKHYAIKAFHKSHLQKLRVAPSETAMTDVLREVLIMKMVQHPNIVNLIEVIDDPESDDFYMVLEYVESKWVCEGTGRPCALGEETAKKYLRDIVSGLTYLHAHNIVHGDIKPDNLLVTRDGTVKIGDFSVSQAFEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNDPLLLPDDINPQLKNLIEGLLCKDPELRMTLGDVAEHVWVIGNDGPIPGYLCWCKRKSLVTEDLDGSNTLV 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00559 409 SMART serkin_6 117 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00559 409 Pfam Protein kinase domain 117 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00559 409 ProSiteProfiles Protein kinase domain profile. 117 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00559 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Spst5g00559 409 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Spst5g00559 409 FunFam Serine/threonine-protein kinase GRIK2 107 407 - -
Spst5g00559 409 FunFam Serine/threonine-protein kinase Ssp1 111 213 - -
Spst5g00559 409 Gene3D Phosphorylase Kinase; domain 1 111 214 - -
Spst5g00559 409 CDD STKc_LKB1_CaMKK 123 378 - -
Spst5g00559 409 Gene3D Transferase(Phosphotransferase) domain 1 216 384 - -
Spst5g00559 409 SUPERFAMILY Protein kinase-like (PK-like) 113 386 IPR011009 -
Spst5g00559 409 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 77 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00559 Spst-Chr5 4566935 4571379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00559 123 385 CBL-interacting serine-threonine protein kinases AT5G35410 33.460 1.28e-42 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Spst5g00559 Pkinase 4.8e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00559 K00908 - gmx:100776013 784.252