Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00557 ATGAGTGCTCAACAAAATGAAAAGGAAAAACATGACGCGCTTTCGTCCAAGCGAACGGTTTCCCTTCCACTGCACATGGTGGATGATCCAATGGGGGTAACAGATGAAACCTCGCGTGTAAATAATCACTGGAAGCGAGAGAAATCTCAGCTGGAAATACCGACCAGCACATTGGAAGAGTGTTGTCAGGATTTTGTTGGAATAAGGATGCCGCTGACGCCGAGTCCAACTCCTAGTCATAAGAGAGTGAATTTTCTTGTGACTTCTCGCTCTGTTGATGCTCCAAGACCTTCTTCTTCTTCAGCTTCGAGAGGCAAATCATCCATGAGAAACATCTTACCACGATTCGGCTTCAAGAATCGTCAATCGCTTGACATTGAAAAGTCTGTTACTGCAGTTCCAGAAGCTTCTTTTTCTGGCCATCAAGACAAGTCCTCAATCTCCAGATCAGTGTCTCTCACCAAGATGTTCACTCCTAAGATTAATAGAACGTCTTCGTTACCGGTAGAAGAAATTGGGCGTGCAAACGTAGAATCTGCTCTGGGTGGAACTCTTGGTGCTTCTCCATGCGGAGGAGAGCCCCAGGGGATGATAGCTCGTTCTCGTTCAGTGCCTGTCAATAGCAAAGAAAAAGGCATCAGGAGAATGGATTCAGTTTTCCGCATCATTCCTTCCACTCCTCGAGTAAATAAAGTGAATGAATCAACAAAGGATACTGAAAATGGTGATGGTGAAGATATTGCTGAAGAGGAAGCAGTGTGTAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACATTGAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAGGAATGTGCTGTTAAATGGTTTAGTATCAAGGGTAACAAGATCTGTGATGTGTGCAAGGAAGAGGTGCGGAACCTCCCCGTCACTCTCTTACGAATCCGAAGTGTTCGAACTCAGAATACTGGAGCAAGGTCCGAGCAGGGAGATGAATACAGGCATGCTCGTTCCTTGATTTGGCAGGAGCTCCCAGTGCTTGTTATTGTCAGCATGCTTGCCTATTTCTGTTTCCTGGAGCAGCTGTTGGTTGGAAAAATGGGAACCAAGGCAATTTTCATCTCTCTTCCATTTTCATGTGTACTGGGTCTACTATCCTCCGTGACATCAACGACCATGGTGAAGAGTAGGTTCATCTGGATATATGCATCTGTCCAATTTATTTCGGTGGTCCTATTCGCCCATATCTTTTACCCCTTGGTTGGTAAGCATGCGGTTTTGTCCATCCTTCTTGCAACATTTGCTGGGTTTGGTGTTGTGATGAGTGGAAGTTCAATTCTTTTGGAGATTTCTAGGTGGAGAAGAAGATGGCAAGCTTTGTCAGAGCAGCAGCGTAGTTCTTCATAG 1407 0.4534 MSAQQNEKEKHDALSSKRTVSLPLHMVDDPMGVTDETSRVNNHWKREKSQLEIPTSTLEECCQDFVGIRMPLTPSPTPSHKRVNFLVTSRSVDAPRPSSSSASRGKSSMRNILPRFGFKNRQSLDIEKSVTAVPEASFSGHQDKSSISRSVSLTKMFTPKINRTSSLPVEEIGRANVESALGGTLGASPCGGEPQGMIARSRSVPVNSKEKGIRRMDSVFRIIPSTPRVNKVNESTKDTENGDGEDIAEEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKICDVCKEEVRNLPVTLLRIRSVRTQNTGARSEQGDEYRHARSLIWQELPVLVIVSMLAYFCFLEQLLVGKMGTKAIFISLPFSCVLGLLSSVTSTTMVKSRFIWIYASVQFISVVLFAHIFYPLVGKHAVLSILLATFAGFGVVMSGSSILLEISRWRRRWQALSEQQRSSS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00557 468 MobiDBLite consensus disorder prediction 90 108 - -
Spst5g00557 468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 309 IPR013083 -
Spst5g00557 468 ProSiteProfiles Zinc finger RING-CH-type profile. 246 308 IPR011016 GO:0008270
Spst5g00557 468 MobiDBLite consensus disorder prediction 1 16 - -
Spst5g00557 468 MobiDBLite consensus disorder prediction 1 48 - -
Spst5g00557 468 SMART ringv_2 253 302 IPR011016 GO:0008270
Spst5g00557 468 SUPERFAMILY RING/U-box 250 305 - -
Spst5g00557 468 PANTHER OS02G0165000 PROTEIN 19 466 - -
Spst5g00557 468 MobiDBLite consensus disorder prediction 90 111 - -
Spst5g00557 468 CDD RING_CH-C4HC3_MARCH 254 302 - -
Spst5g00557 468 Pfam RING-variant domain 254 301 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00557 Spst-Chr5 4532159 4535731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00557 243 308 C3H Transcription Factor Family AT2G37950 43.284 1.36e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00557 - - gmx:100815599 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00557 5 4532159 4535731 Spst5g00557 5 4532159 4535731 ECH
Spst5g00557 5 4532159 4535731 Spst11g01364 11 38143277 38148717 PCT