Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00553 ATGTGCCAGGAAAATAATTCTGAAAACCAGTTTGGTATACAGTTCATTACACCTCTTGGTGTGGTGGGATCAACCTACGAATTATACGCTGAGGCTTTGATCACTTTTCAAGGTTCGCTTGGTGGTCCACAGCAATTAGGATGCAGCATTGTGAAATATCCATGTCAAATGCAATGGCCTTGTCTTGACTGCTATAAACTAAAAGATCCAGGTGGAGTAACAGCAAAGATAGATGGGAATAATGACATTCCAACACTTACACCTCTTCCAGAAACTAAAGATAGAAAACCAGGTGGAAGAAGGAGTTCTGCCATAATTGGCAGCGTTATAGCTGCCTTAGTTGTCGTTGTAATTGTGGTGACTGTCTATATCTGCTTGATGCGTGTTAAAAGATTTATGAGGCAAACATCTGAGATTGCTTCTTCTATGCCATCTCCCACTGTTGAAATGGGAAGACTCAACACGCAGCATGTTACTGCTTTCTCTCCACAAAGCCCAAGGCAGTTAACAATTTTGGAACTGGAACAAGCTACACGGAATTTCAGTCATAATAATATCATAGGTGAAGGTGGATTTGGTTTTGTATACAAGGGCTTGCTTCAAGATGGTTCTATTGTGGCTATAAAAAGGCGTCTATTTGCTCTCACACAAGATTTCGTCCTTGAGGTGAAACAGATAGCTCATATTCACCACATCCATCTTGTCAAGCTTATAGGCTATTATGAAGATAGCCATCAACAATTACTAGTATATGAATATCTCCCTAACGGCAATGTAGGGAGTCACCTATATGATGGTGAAGGTTTACCTATTGGAAGGCTAGACCTGTGGCGAAGGTTATCTATTGCTTTAGGCGCATCCAAAGGAGTGGAACATCTTCACAGTTTGGTCCCTCCTTTGATTCACAAAAACTTTCGAACTAGCAACGTTCTGCTTGATGAAAATTATACTGCCAAGGTTTCTGGTTACGGCTTCTGCAAATTGCAAACACAAGTTGATCAGCCAGGCTCGTCTTCAAATGTAGACTGTTTTCTTGACCCAGAGTTGAGCTTTCCACAAAACTTTTCGGAGAAGAGTGATGTATACAGTTTCGGGGTGTTCTTGCTAGAGTTGATTAGTGGCTGTGAAGCACATAACCAAAACATGTTACACCCAGATGGAAACATAGTACTTCAGGCAAAAAATAGTGTTGACTTGGACAAATTTGTTGACATAACGCTGGGAGACCAAGAAAAGCATGGTGCCAGACGAATATTGATGTTGGCATTGGTATGTGTGGATGTGGCTTTTAGAAGACCATCAATGGCGCAAATTGTGCTAGAGCTGGAGCGGATTCAAAGAGAGATTGCTCCTATGTATTCTCAATTCAACGATGAGATTGGTGCCGTGACTCTTGGGAGTGAGCTCTTCCAGTAA 1416 0.416 MCQENNSENQFGIQFITPLGVVGSTYELYAEALITFQGSLGGPQQLGCSIVKYPCQMQWPCLDCYKLKDPGGVTAKIDGNNDIPTLTPLPETKDRKPGGRRSSAIIGSVIAALVVVVIVVTVYICLMRVKRFMRQTSEIASSMPSPTVEMGRLNTQHVTAFSPQSPRQLTILELEQATRNFSHNNIIGEGGFGFVYKGLLQDGSIVAIKRRLFALTQDFVLEVKQIAHIHHIHLVKLIGYYEDSHQQLLVYEYLPNGNVGSHLYDGEGLPIGRLDLWRRLSIALGASKGVEHLHSLVPPLIHKNFRTSNVLLDENYTAKVSGYGFCKLQTQVDQPGSSSNVDCFLDPELSFPQNFSEKSDVYSFGVFLLELISGCEAHNQNMLHPDGNIVLQAKNSVDLDKFVDITLGDQEKHGARRILMLALVCVDVAFRRPSMAQIVLELERIQREIAPMYSQFNDEIGAVTLGSELFQ 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00553 471 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 112 445 IPR047117 -
Spst5g00553 471 ProSitePatterns Protein kinases ATP-binding region signature. 187 209 IPR017441 GO:0005524
Spst5g00553 471 Gene3D Transferase(Phosphotransferase) domain 1 254 463 - -
Spst5g00553 471 SUPERFAMILY Protein kinase-like (PK-like) 159 450 IPR011009 -
Spst5g00553 471 Gene3D Phosphorylase Kinase; domain 1 145 253 - -
Spst5g00553 471 FunFam receptor-like serine/threonine-protein kinase NCRK 153 253 - -
Spst5g00553 471 Pfam Protein tyrosine and serine/threonine kinase 184 384 IPR001245 GO:0004672|GO:0006468
Spst5g00553 471 ProSiteProfiles Protein kinase domain profile. 181 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00553 Spst-Chr5 4506154 4509865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00553 98 445 Receptor kinase-like Gene Family AT1G79620 35.040 6.07e-53 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Spst5g00553 PK_Tyr_Ser-Thr 1.4e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00553 - - gmx:100815066 758.829