Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00551 ATGGCCAAAGACGTTGAGCAGGTCACAGAGCAAGGCGAATACTCCGCCAAGGACTACCACGATCCACCTCCGGCGCCGCTCATCGACCCCGATGAGCTCACCAAGTGGTCCTTGTACAGAGCCGCCATAGCCGAATTCATAGCCACCCTCCTCTTCCTTTACATCACCGTCTTGACCATCATTGGCTACAAGAGACAGAGCGACACCACTATTCCCGGTAACACCGAGTGTGACGGCGTTGGCATTTTGGGCATCGCTTGGGCCTTCGGTGGCATGATCTTCGTCCTCGTTTACTGCACCGCCGGCATCTCCGGAGGACACATCAACCCTGCGGTGACATTCGGGTTGTTCCTGGGGCGCAAGGTGTCGTTGGTGAGGGCGTTGTTGTACATGGTAGCACAGTGCGCCGGTGCAATCTCCGGTGCTGGGTTGGCGAAGGGGTTCCAGAAGGCCTACTACAACAGGTACGGTGGAGGAGCTAACACTGTGAGCGATGGCTACAACAAAGGTACTGCCTTGGGTGCTGAAATCATTGGTACCTTTGTTCTTGTCTACACTGTTTTCTCCGCCACTGATCCTAAGAGAAGCGCTAGGGACTCTCATGTTCCCGTTCTAGCACCCCTTCCCATTGGGTTTGCCGTCTTCATGGTTCACTTGGCAACAATCCCTATCACTGGAACCGGCATTAACCCGGCAAGGAGTTTCGGACCAGCTGTGATCTTCAACCATGACAAAGCCTGGGACGACCAATGGATTTACTGGGTTGGACCGTTTGTGGGAGCTGCGGTGGCTGCATTCTACCACCAATACATTCTTAGAGCTGCAGCAATAAAGGCTCTTGGATCCTTCAGGAGCAACGCTTAA 864 0.5428 MAKDVEQVTEQGEYSAKDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTTIPGNTECDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMVAQCAGAISGAGLAKGFQKAYYNRYGGGANTVSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGPAVIFNHDKAWDDQWIYWVGPFVGAAVAAFYHQYILRAAAIKALGSFRSNA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00551 287 Pfam Major intrinsic protein 32 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst5g00551 287 Gene3D Glycerol uptake facilitator protein. 25 287 IPR023271 -
Spst5g00551 287 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst5g00551 287 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst5g00551 287 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst5g00551 287 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst5g00551 287 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst5g00551 287 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst5g00551 287 MobiDBLite consensus disorder prediction 1 17 - -
Spst5g00551 287 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Spst5g00551 287 SUPERFAMILY Aquaporin-like 32 273 IPR023271 -
Spst5g00551 287 FunFam Probable aquaporin PIP1-2 25 287 - -
Spst5g00551 287 CDD MIP 40 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst5g00551 287 MobiDBLite consensus disorder prediction 1 25 - -
Spst5g00551 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 276 IPR034294 -
Spst5g00551 287 NCBIfam MIP family channel protein 44 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00551 Spst-Chr5 4494975 4496141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00551 1 287 Major Intrinsic Protein MIP AT2G37170 78.397 6.35e-167 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00551 K09872 - gmx:732604 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00551 5 4494975 4496141 Spst5g00551 5 4494975 4496141 ECH
Spst1g02903 1 37628570 37630586 Spst5g00551 5 4494975 4496141 ECH
Spst7g01010 7 17879629 17880683 Spst5g00551 5 4494975 4496141 ECH
Spst5g00551 5 4494975 4496141 Spst11g01359 11 38103356 38104926 PCT