Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00544 ATGAAGGAAACAGAGAAGAGTTTGGATCCGCAGCTGTGGCATGCGTGCGCCGGCGGGATGGTTCAGATGCCGCCGGTGAACTCCAAGGTGTTCTACTTTCCTCAGGGCCACGCGGAACACGCGCAGTTCAACCTGGATTTCGGAGTCTCCAGGATTCCGATTCCGCCGCTTGTTCTCTGTCGCGTGGCGGCTGTCAAATTTCTCGCCGACCCCGAAACCGACGAGGTCTTCGCCAGGTTGAGGTTGGTTCCTCTAAGAAACAGCGAGCTTGACCACGAAGACAACGATAGCAGTGACGGTAATGGCGCCGAGGGTTCTGAAAAGCCAGCGTCTTTCGCGAAGACGTTAACTCAATCGGACGCCAACAATGGTGGGGGATTCTCCGTGCCTAGATACTGCGCGGAGACGATTTTCCCGCGGCTGGATTACTCGGCGGAGCCACCGGTGCAGACGGTGATCGCGAAGGATGTGCACGGCGAGGTCTGGAAGTTTCGGCACATTTACCGAGGGACTCCTCGTCGGCACTTACTTACCACCGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTTGCAGGGGATTCCATCGTGTTTCTGCGGGCGGAGAATGGGGATCTTTGCGTGGGGATTCGTAGGGCCAAGAGAGGGGGTGTTGGTGGGCCCGAGGCGCCGTGTGGGTGGAGTTCTGGTGGTGGTGGTGGTGGTGGGGGGCTTGGGCCTTATGGGGCCTTTTCGGCTTTCTTGAGGGAGGAGAGCAAGGTGGTGAGGAATGGGTGTGGGAGACCGAAGGTGACTGGTGAGTCTGTGAGGGAGGCTGTTGCTTTGGCTGCTAACAACCAACCCTTTGAGATTGTTTATTACCCTCGAGCCAATACTCCTGAGTTCTGTATTAGGACTTCGGCTGTGAGAGGTGCTATGAGGATTCAGTGGTGCTCCGGGATGCGGTTTAAGATGCCCTTTGAGACTGAGGATTCTTCCAGGATAAGCTGGTTCATGGGCACCATTGCTTCTGTTCAGGTTCTTGATCCTATCCGCTGGCCTAATTCACCTTGGAGGCTTCTTCAGGTTACATGGGATGAGCCAGATTTGTTACATAATGTGAAGCGCGTAAGTCCATGGTTGGTTGAGTTGGTATCTAACGTGCCAATCATCCATCTGGCACCATTCTCACCACCGAGGAAGAAGCTTAGGTTTCCACAACACCCAGAGTTTCCCCTTGAAGTTCAATTTCCGATACCAACGTTTTCAGGCAACCCCTTTGGGTCTAGCACTAGCAGCCCCTTGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTGTCAGATCTCCACCTTAACAAAAATAAGCTGCAGTTGGGGTTGCTACCAACTAACGTTCGCCAGCTTGATTTGCACACTGGGATTTCTAATGGCAACATCACCAACCATGGTAAGAGTAAAGAGAGTCTATCATGCTTGCTCACCATTGGAAATTCACCTAAGAGTTTGGAGAAATCTGATCAAGTGAAGAGACACCAATTTTTGCTTTTTGGTCAACCGATACTCACCGAGCAACAAATTTCTAGATCTTCTAGTGATGTGTTGTCTCACAATTGCACCGCAACAGATGATGAGAATAAGGAGAAGATTGAGAAGGGATTCCTTAGTGATTCCCAGTCCTCAGTTTCCCCAGGAAAGTCGTCTTCTACCGCTGAGTTCTCTTGGCAACTCGGTTCTGATACCAGTCACTGCAAGGTTTTCATGGAGTCAGAAGATGTTGGACGGACCCTTGACTTGTCCTGTCTTGGTTCTTATGATGAGTTGTACATGAGACTGGCCAAAATGTTTGGAATAGAACGGTCTGAGATGTTGAGCCATGTTCTCTACCGCGATTCAACCGGTGCCCTTAAACAAACTGGAGAAGAACCATTCAGTGAGTTCATGAAGACAGCTAAAAGATTGACAATTCTGACTGATTCAAGCAGCAAAGATAGTAGAAGGGTTTGGATCACAGGAACTCGGAATGCTGAACATGGATTGGATGCTACTTCAAATAAGACAGGTCCTATGAGTATATTTGCTTAA 2097 0.5026 MKETEKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQFNLDFGVSRIPIPPLVLCRVAAVKFLADPETDEVFARLRLVPLRNSELDHEDNDSSDGNGAEGSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGGVGGPEAPCGWSSGGGGGGGGLGPYGAFSAFLREESKVVRNGCGRPKVTGESVREAVALAANNQPFEIVYYPRANTPEFCIRTSAVRGAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVLDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNVPIIHLAPFSPPRKKLRFPQHPEFPLEVQFPIPTFSGNPFGSSTSSPLCCLSDNAPAGIQGARHAQIGISLSDLHLNKNKLQLGLLPTNVRQLDLHTGISNGNITNHGKSKESLSCLLTIGNSPKSLEKSDQVKRHQFLLFGQPILTEQQISRSSSDVLSHNCTATDDENKEKIEKGFLSDSQSSVSPGKSSSTAEFSWQLGSDTSHCKVFMESEDVGRTLDLSCLGSYDELYMRLAKMFGIERSEMLSHVLYRDSTGALKQTGEEPFSEFMKTAKRLTILTDSSSKDSRRVWITGTRNAEHGLDATSNKTGPMSIFA 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00544 698 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 664 IPR044835 GO:0003677|GO:0006355|GO:0009725
Spst5g00544 698 SUPERFAMILY DNA-binding pseudobarrel domain 107 213 IPR015300 -
Spst5g00544 698 Pfam Auxin response factor 272 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Spst5g00544 698 Gene3D - 110 214 IPR015300 -
Spst5g00544 698 FunFam Auxin response factor 310 383 - -
Spst5g00544 698 FunFam Auxin response factor 110 214 - -
Spst5g00544 698 MobiDBLite consensus disorder prediction 90 109 - -
Spst5g00544 698 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Spst5g00544 698 CDD B3_DNA 111 212 IPR003340 GO:0003677
Spst5g00544 698 Gene3D - 582 669 - -
Spst5g00544 698 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Spst5g00544 698 SMART B3_2 112 214 IPR003340 GO:0003677
Spst5g00544 698 Gene3D - 310 382 - -
Spst5g00544 698 ProSiteProfiles PB1 domain profile. 585 665 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00544 Spst-Chr5 4412678 4415523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00544 4 667 B3 DNA Binding Superfamily AT4G30080 59.971 0.0 777
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Spst5g00544 B3 4.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00544 - - gmx:100778135 1265.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00544 5 4412678 4415523 Spst5g00544 5 4412678 4415523 ECH
Spst5g00544 5 4412678 4415523 Spst11g01347 11 37974255 37977274 PCT