Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00542 ATGAAGGACTCCTGGTTTTTCGACAATAACTTCAATGGTCTGTCAGATGAGATTTTTGATGATGTCGTTGGCTTTTTTGATTTCCCTCTGGAAGATGTGGAAGAAGATTGGGATTCTCAATTGAAATGCCTTGAAGACCAACATTCTGAGGTTCTTTCAGCATCATCAAATGGGCTATGTGGCAAAACTCAAACTGAAAACCCCCAACTCGGAACGGAGTTCTCTGCTTCTTGTAACGTGATTTCCCCAATAAAACAGCTGGCAAAGGCTCCTGGACCAACATATGGAAAATCCATTCCCATCAAGAATGTCAATTTCAATGGAAAAGATTTGTATCAATTCCGAACCTACAGCCCAGTTTCAGTTTTTGAAAGCAGCAGTTCTTCCTCTGTTGAGAATTCCAACTTTGATCAACCTGTCATTCCAGTAAAGCGGGCTCGAAGTAAACGGCAGCGTGTTTCAAGCTTCAGTCCTCTATTTTCCAATCCTTTCATCCTTAATTCACAGGCTTTGCAGAAACAGCTAAGGACATCTGCCTCTGAATCAGATTTCGGAACAAATGCTGCTGGGAATATATCAAACAAAGTAAAAAGCCACAGGAAAAAGGATTTGTCCCTGCTGTCAGAAGATGTTGAGATGATAAGATCCTCACATCTGGAGTCAGATCCCCCCAGAAAATGCATGCATTGTGAGGTGACAAAGACTCCACAATGGAGAGAGGGACCTATGGGTCCCAAAACACTCTGCAATGCTTGCGGTGTTCGATATAGGTCTGGCCGCCTCTTTCCGGAGTACCGGCCAGCAGCTAGCCCAACTTTTGTTGCATCATTGCACTCAAACTGTCACAAGAAGGTCGTGGAGATGAGAAGCAGAGTCCAGGAGGGTGTTAGGGGTTCTATGTTGGCTTCATCAAATCTCCATGGAAATTCTGTAGGATAA 939 0.4388 MKDSWFFDNNFNGLSDEIFDDVVGFFDFPLEDVEEDWDSQLKCLEDQHSEVLSASSNGLCGKTQTENPQLGTEFSASCNVISPIKQLAKAPGPTYGKSIPIKNVNFNGKDLYQFRTYSPVSVFESSSSSSVENSNFDQPVIPVKRARSKRQRVSSFSPLFSNPFILNSQALQKQLRTSASESDFGTNAAGNISNKVKSHRKKDLSLLSEDVEMIRSSHLESDPPRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNCHKKVVEMRSRVQEGVRGSMLASSNLHGNSVG 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00542 312 ProSiteProfiles GATA-type zinc finger domain profile. 221 257 IPR000679 GO:0006355|GO:0043565
Spst5g00542 312 Pfam GATA zinc finger 227 260 IPR000679 GO:0006355|GO:0043565
Spst5g00542 312 CDD ZnF_GATA 226 273 IPR000679 GO:0006355|GO:0043565
Spst5g00542 312 Gene3D - 218 293 IPR013088 GO:0006355|GO:0008270
Spst5g00542 312 SMART GATA_3 221 271 IPR000679 GO:0006355|GO:0043565
Spst5g00542 312 PANTHER GATA TRANSCRIPTION FACTOR 34 293 - -
Spst5g00542 312 FunFam GATA transcription factor 216 302 - -
Spst5g00542 312 ProSitePatterns GATA-type zinc finger domain. 227 252 IPR000679 GO:0006355|GO:0043565
Spst5g00542 312 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 220 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00542 Spst-Chr5 4401250 4404614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00542 8 301 C2C2-Gata Transcription Factor Family AT1G08010 34.426 3.23e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst5g00542 GATA 3.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00542 - - gmx:100778675 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00542 5 4401250 4404614 Spst5g00542 5 4401250 4404614 ECH