Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00536 ATGGCTTTTGGTAATTCAAGATCTGCAAGGTTTGAAGATGATCCGGAGCTAGCTAAATTTCCTACAAGCAATCGTGACAATGGTGTCAAGATCAAATACCACATTGATGGGACACAAATACCCGAGCCTAGTTCCAAAATGGCTCAGAAAAAGGTGACGGGGAAGTTCTTGAAAGCTAGAATGTTGTCAAGAGTATTCTCAGAAGACTATGACAGAGTCAAACGAAGAGTATTAGATCCTAGGGGGAAAATCATACACCGATGGAACAAGATTTTCTTGGTAGTATGTTTAGTATCTTTGTTTGTGGACCCTTTGTTCTTTTATCTGCCCGTGGTTCGAGATGAAGTATGCATTGATATTGGAATTACTCCTGAGGTTATCCTCACTTTGGTAAGATCAGTGGGTGATATCTTCTATGTGATTCAGATTTTGTTGAAGTTTCGAACGGCGTTTGTTGCTCCTTCTTCGAGGGTTTTTGGGAGAGGAGAACTTGTTGTAGGATATTCTAAGATTGCAGTTAGGTACCTTTGCAAGAGTTTCTGGTTAGACTTAGTTGCTGCCCTTCCCCTTCCTCAGGTGTTAATTTGGATTATTATCCCAACTCTTAGGGGTTCAACCATGGCCAACACAAAAAATGTCCTTCGCTTCTCCATCATTTTCCAATACTTTCCGAGGCTAGTTTTGATTTACCCACTCTCGTCACAAATTGTAAAAGCTACAGGGGTTGTGACAGAAACAGCATGGGCAGGGGCTGCTTACAACCTAATGCTTTACATGTTGGCTAGCCATATTTTAGGGGCTTGCTGGTATCTTCTGTCAATCGAACGTCAAGAAGCATGTTGGAGAAGTGTATGCGATTTGGAGAAGTCATTTTGTCAAGATGGATTCTTTGACTGTCACAGTATTAAAGATGCCCACAGGGTGTCCTGGTTCATAGCAAGTAATATCACAAATTTATGCTCACCAAATGGAACAGATGACTTCTATCAGTTTGGTATATACGCCGATGCCGTGACTTCCAAAGTAACATCCTCCGCATTCTTTAACAAATACTTTTTTTGCCTATGGTGGGGTCTAAGGAATCTGAGTTCTTTGGGACAAGGCCTTCTTACCAGCACATATGTTGGGGAGATAACGGTCGCTATTGTTATTGCAACTCTGGGATTGGTTCTTTTTGCGTTGCTAATTGGTAATATGCAGACCTATCTCCAATCAACCACTGTTCGCTTAGAAGAGTGGAGGGTGAAAAGAACTGATACAGAACAATGGATGCATCACAGACAACTACCACCAGAACTAAGAGAATCTGTGCGTAAATACGACCAATACAAGTGGCTGGCAACACGAGGAGTAGATGAAGAATCTCTTCTCAAAGGACTTCCACTGGATCTTCGGAGAGACATCAAACGCCACCTTTGTCTCGATCTAGTTCGAGGAGTGCCATTATTTGATCAAATGGATGAGAGAATGTTGGATGCAATCTGCGAAAGGCTAAAGCCTGCATTGTGCACAGAGGGCACGTTTCTTGTGCGCGAGGGTGATCCTGTGAATGAGATGCTCTTCATAATCCGAGGCCATCTTGATTCCTACACCACCAACGGGGGGCGGGTCGGGTTCTTCAACTCGTGCCGTATTGGACCGGGTGATTTCTGCGGCGAGGAGCTGCTAACATGGGCCTTGGACCCGAGGCCCAGTGTGATCCTTCCTTCGTCAACTCGAACAGTGAAAGCCATATCGGAAGTGGAGGCCTTTGCACTGATAGCGGAAGACCTGAAGTTCGTGGCGTCGCAGTTCAGAAGACTGCACAGCAAACAATTGAGACACAAATTCAGGTTTTACTCTTACCAGTGGCGAACCTGGGCTGCATGTTTTGTTCAAGCCGCGTGGAGAAGGCATAAGAAGAGGAAGGAACTTGCTCAATTAAGGGCCAGGGCCATTCACAATGCTCAGCCTCAGACACCAACGTATGCCCAAAGGGTGGCCAGGAGTACTAGGAAAGGTGTTGTTAATGTGTCTTCTCCCACAGAATCTGGTGTGGTCTCCTCTTTGCCGAAGCCAGCAGAACCAGATTTCTCTCTTGATTAA 2085 0.4489 MAFGNSRSARFEDDPELAKFPTSNRDNGVKIKYHIDGTQIPEPSSKMAQKKVTGKFLKARMLSRVFSEDYDRVKRRVLDPRGKIIHRWNKIFLVVCLVSLFVDPLFFYLPVVRDEVCIDIGITPEVILTLVRSVGDIFYVIQILLKFRTAFVAPSSRVFGRGELVVGYSKIAVRYLCKSFWLDLVAALPLPQVLIWIIIPTLRGSTMANTKNVLRFSIIFQYFPRLVLIYPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHILGACWYLLSIERQEACWRSVCDLEKSFCQDGFFDCHSIKDAHRVSWFIASNITNLCSPNGTDDFYQFGIYADAVTSKVTSSAFFNKYFFCLWWGLRNLSSLGQGLLTSTYVGEITVAIVIATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPPELRESVRKYDQYKWLATRGVDEESLLKGLPLDLRRDIKRHLCLDLVRGVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRVGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSYQWRTWAACFVQAAWRRHKKRKELAQLRARAIHNAQPQTPTYAQRVARSTRKGVVNVSSPTESGVVSSLPKPAEPDFSLD 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00536 694 Gene3D Jelly Rolls 480 600 IPR014710 -
Spst5g00536 694 Gene3D Helix hairpin bin 409 473 - -
Spst5g00536 694 FunFam Cyclic nucleotide-gated ion channel 1 480 598 - -
Spst5g00536 694 FunFam Cyclic nucleotide-gated ion channel 1 409 473 - -
Spst5g00536 694 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 62 691 - -
Spst5g00536 694 PRINTS EAG/ELK/ERG potassium channel family signature 143 152 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst5g00536 694 PRINTS EAG/ELK/ERG potassium channel family signature 395 404 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst5g00536 694 PRINTS EAG/ELK/ERG potassium channel family signature 351 368 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst5g00536 694 PRINTS EAG/ELK/ERG potassium channel family signature 260 270 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst5g00536 694 PRINTS EAG/ELK/ERG potassium channel family signature 445 452 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst5g00536 694 CDD CAP_ED 482 613 IPR000595 -
Spst5g00536 694 MobiDBLite consensus disorder prediction 652 694 - -
Spst5g00536 694 SUPERFAMILY Voltage-gated potassium channels 79 404 - -
Spst5g00536 694 Gene3D - 87 406 - -
Spst5g00536 694 ProSiteProfiles cAMP/cGMP binding motif profile. 482 579 IPR000595 -
Spst5g00536 694 SUPERFAMILY cAMP-binding domain-like 412 608 IPR018490 -
Spst5g00536 694 Pfam Ion transport protein 88 409 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Spst5g00536 694 MobiDBLite consensus disorder prediction 652 680 - -
Spst5g00536 694 SMART cnmp_10 482 613 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00536 Spst-Chr5 4334869 4338142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00536 54 692 Ion Channels AT2G28260 76.526 0.0 1012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00536 K05391 - gmx:100786868 1253.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00536 5 4334869 4338142 Spst5g00536 5 4334869 4338142 ECH
Spst5g00536 5 4334869 4338142 Spst11g01340 11 37913893 37919361 PCT