Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00534 ATGAAGCCTCAATTCAATGTTGCTGTGGCTCTAGTTATTAGTATGCTCTGTATTCAGCATTCATTTTGTGATGAACCTTCTGATATTGGACTGAAAAAGTGGCAATGTAGATGCTCTTCATTACAAGGGAACCAGATATACTCTCCTGCTAATTGTTCCAAGTCATGTGATTGTCATCCAGATGCGGAACAGAGTGCATCCATATGGACATGCGTATGTGATTCGAATGGGTTTCCTGAAATTTCAGCAGATGGCCATAACCTTAATTGTTTTAATGCCTGCAATTGCACCTGGGGAACTTTCAGGATGCCACTAGGTTCAAAGACACAAATTTCGAGCAAGATTGTAGTAGTTATTCTATCAATATGTGTGGCATGCACCACTATTGCATTTCTTGCCTCAGTTGTATGTCAAGTCTGCCGAAGGGAGAGATGTCCTATTCAATCACCAATGATCTCATCAGATAGAGAATCAAGTTACAGTAGCACCACCAACTTAATTAGTCATAAGACTTCTTCGGTGCTAGAAACAAAAGTTGTTATATATTCTCCTATTAGTCATATTACAGGATGCTTCCAGAAGTCCTCTTTGTTGTTTGGTGGCCAAAGACAAACCTTTCATGGAAATATCATTCAATTTTCATTTGCTGAACTGGAATATGCCACAGAAAACTTTTCAACTTCCAATCTAACTGGACTAGGTGGAAGCAGTTATGTATACCGTGGTCAGCTGAAAGATGGTAGTAATGTGGCAGTCAAGAGACTAAAAGATCAAAGAGGGCCTGAGGCAGACTCTGAATTTTTTACAGAGATTGAACTATTATCTCGACTTCATCATTGTCATCTGGTGCCATTGGTGGGATACTGCTCAGAATTAAAAGGAAAAAATGTTCAAAGGTTGCTAGTCTTTGAATACATGACTAATGGAAATTTGAGGGACCGCTTAGATGGAGTTTTTGGGAAAAAAATGGACTGGTCAACTCGAGTTAGAATTGCATTAGGAGCTGCAAGGGGCTTGGAGTATCTTCATGAAGCAGCTGCTCCAAGAATTCTGCACAGAGACGTCAAATCAACAAACATTCTTCTGGACAAAAATTGGCAAGCAAAAATAACTGATCTTGGTATGGCTAAAAACTTGAGAGCTGATGACCACCCCAGTTGTTCAGATTCTCCAGCAAGAATGCAGGGAACATTTGGCTATTTTGCACCTGAGTATGTAATTGTTGGGAGAGCCTCTCTTGAGTCTGATGTCTTCAGTTTTGGAGTGGTTCTTCTTGAGCTTATCAGTGGTCGGCAACCCATCCACAAATACGCTGGAAAAGAACAAAGTCTTGTTATATGGGCAACTCCTCGCTTAAAGGATAGCAGGCGTGTAATAACCGAGTTGGCTGATCCACAATTGAAAGGAAACTTCCCAGAAGAAGAGCTGCAGATAATGGCGTACTTAGCTAAGGAATGCTTGCTGTTGGATCCTGACACTCGGCCAACGATGAGTGAAGTTGTTCAAATTCTTTCCAGTATCACCCCAGGCAGATCTAGAAGGAGAAGAAACTTTCCTGTGAGCCTTTTTCAGGAACCGGAGGACTTGGAGAATCCAAGCCAGGCTCCATCATGTATATTTCCATCTTGTAACTTATTGCCATTAGGTGTTGATCACAGTCTTAATGTTGGGAATGAAAATAAAGACGTCCATACAGTTTCAACTGAGCATATGGAGAGTTCAAAGGGTGAGAGCTGGCATGCATCAGAGGAGGATATGATAGACTTAACTGAGCCTCGCGTGGCTCAGTTGACAACAACAAGCTTGGCTTTATTCCTGCAGAACGCATCCCTCACGGGAGAGTGA 1845 0.4173 MKPQFNVAVALVISMLCIQHSFCDEPSDIGLKKWQCRCSSLQGNQIYSPANCSKSCDCHPDAEQSASIWTCVCDSNGFPEISADGHNLNCFNACNCTWGTFRMPLGSKTQISSKIVVVILSICVACTTIAFLASVVCQVCRRERCPIQSPMISSDRESSYSSTTNLISHKTSSVLETKVVIYSPISHITGCFQKSSLLFGGQRQTFHGNIIQFSFAELEYATENFSTSNLTGLGGSSYVYRGQLKDGSNVAVKRLKDQRGPEADSEFFTEIELLSRLHHCHLVPLVGYCSELKGKNVQRLLVFEYMTNGNLRDRLDGVFGKKMDWSTRVRIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKNWQAKITDLGMAKNLRADDHPSCSDSPARMQGTFGYFAPEYVIVGRASLESDVFSFGVVLLELISGRQPIHKYAGKEQSLVIWATPRLKDSRRVITELADPQLKGNFPEEELQIMAYLAKECLLLDPDTRPTMSEVVQILSSITPGRSRRRRNFPVSLFQEPEDLENPSQAPSCIFPSCNLLPLGVDHSLNVGNENKDVHTVSTEHMESSKGESWHASEEDMIDLTEPRVAQLTTTSLALFLQNASLTGE 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00534 614 FunFam receptor-like serine/threonine-protein kinase NCRK 306 516 - -
Spst5g00534 614 Pfam Protein kinase domain 229 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00534 614 FunFam receptor-like serine/threonine-protein kinase NCRK 199 305 - -
Spst5g00534 614 SUPERFAMILY Protein kinase-like (PK-like) 206 504 IPR011009 -
Spst5g00534 614 PANTHER OS01G0750732 PROTEIN 32 509 - -
Spst5g00534 614 CDD STKc_IRAK 232 507 - -
Spst5g00534 614 ProSiteProfiles Protein kinase domain profile. 225 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00534 614 SMART serkin_6 225 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00534 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 350 362 IPR008271 GO:0004672|GO:0006468
Spst5g00534 614 Gene3D Phosphorylase Kinase; domain 1 200 305 - -
Spst5g00534 614 Gene3D Transferase(Phosphotransferase) domain 1 306 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00534 Spst-Chr5 4326309 4330752 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00534 1 593 Receptor kinase-like Gene Family AT2G28250 52.174 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Spst5g00534 Pkinase 7.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00534 - - gmx:100499641 1047.34