Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00528 ATGAGCAGTTTAAGGCCTGAGTCTCATGTGGCACAGCAAATTCGGCGCGAAAAATTGAGAATCCAAAACAGTTCTCAACATCTGCAAGAATTCCCTAACAATCTCGAACAGTTATCATCACAGCCAGGGTTTAATAACTTTGACCTTCTTCAAGTTAGGAATGTTAGAAACGCTAACATGCTTGATGAACCGGTTGTTTACTCATCAGAAATACCAAACTTCTCCACTTCTTCAAACCCTTTGTCTGCTCCAAAGAACGCGTTGGAGTATCATCATCAAGAAATAGGTGCAGCTGAACCGAGTAATAGGCTGATGATGACTCACTATGGTGCATTTTACCATTCCATTCCCGCTATTCATTCTTCCCATACGGAACAGTGTGAACTTCGTAGTTTGGGAAATTGGAGGAACAGTGCTCCCCATCAAGGATCTGATTGGTTTTGTAATTATGCAAGTAATGCCAATTCTTTGTTGTCTTCTGAGCTCAACAATGTGTCTGCTTACGACGAACTTATGGATGTACAGTGTAGGAATGCATCTGGTGATAGAGAAATTCAAAAGCAATTAGGTGTACTGCATAATCCTCCTCCTTCTTCTCCACTGTATCAGAATGCTTTGCACGATATTGTGAAGTCGGCTTCTATCAGTGCCCTCTCTAGGCAAGACGCGACTTCCCTGATGCAACATAATGACCACAGCATTTGGGTGGGGAATGCTAGTGAAGTTGAGCTTCAACAACCAAGTTATGGAAATCAGCCAAATCCGTTACGTTTTGGATGGACAAATCGAGCAGTAGATAATACCCCTAGTGATTCACTTCCTCAGAGCTTATCCTTGTCACTTTCATCGAATGCACAACCCAAGCCTTCTGTTTCTCAGCATGAACAAGGGTCTACATCAGATGATCCTCATTGTTTGAAGTATATGAAGTCGTCTATTGTTTCAAGAGATTGTGGGAAATCACTTCAAGACGCGGTGGGAATGCCTTCAAAGTGTACTTTTAGTTACCGTAGTGTGGGTCCCCTTGGCCCTTTCACCGGGTATGCTACTATTCTTAAGAATTCAAGGTTCTTAAAATCTGTCCAACAATTGTTAGATGAGATTTGCTGTCTTTCTGGTGCAAAATTTCCGAAATCATATGATGTTTCCAAGAGGGTTTCTCCAGAAGTTAGTGCTTCTACTTCTGCTGATACTGTTACTGTCAACGAAACCAGGGTTACTGCAAAAGGTAGTAACTCAGGTTCTTCATCAACTATGTTGTATAATGTCTCAAAGGAAAATAGTGCTGATCAGGGTGTTGGAAGTAGCTTTGGTCTTTCTTCGCGGCCAGATTTTCAGCAGAAGAAAGCAAAGCTGCTGTACATGCAAGAAGAGGTTACGAGGCAATGCAAGCAGTACCATCTACAAATGCAAATGGTTGTTTCATCGTTCGAGTCAGTAGCGGGTCTTAGTTCTGCTACTCCTTACATCCCCATGGCTCTCAAGTCAGTATCGAAACATTTCAGGTGTCTAAAAAATTCTATCTCAGATCAGCTCAAGCTTATAAGCGAAGCCTTGGGAGAGGATTTGTCTATTCCCTCCACCAGTACTTGTAGTAAAGCTGACACTGCTATGGCGAGGATAAGATGCAGCAAGGACCAAAGCTTTCTAAAGAACAAATCTGGCAGGGTTACTACAGATCTTCTTGACCCCCAACAGCATGTGTGGAGGCCTCAGAGAGGGTTGCCAGAGCGTGCAGTGGCAATTCTTAAAGCCTGGTTATTTGAGCATTTTCTTCATCCTTACCCTACAGACACTGATAAACACATACTGGCTAGTCAAACAGGTCTATCACGGAACCAGGTATCAAATTGGTTCATAAATGCTCGAGTACGAGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTTGAAACTAAAGCAACAGGCACCAAGGAGAATAATGGTAAACATGAGGGAACATCTCCTGGCACTCAAGGTGATACCAGCCAACCTAGAATGGATAAGCATTTGAGCAATATTGGTATGGATTCAATACCTGAAAACCAATTTGATGGTATGGAAATGGGATCAAGCAATGTTGGGGAAAGTGAGTTGAATGAAGAACCATGGTGTCAAGAGAAGAGATCTAAAGTGGAATGCCAAATGACTTCAAACGATATGGATGGTACGCTGATGGGTTTTGTGCCATACCGACGTGGTGGTCTTGAGGTTGGTGGACTTGGTTCTGTGTCACTAACATTGGGTCTTAGGCATGGTGTTGAAGGGGTGCAACACCAACAACAATTGCAAGAGGAGCAGCTTAGACATCGCCTTGGAGGGCACATGATCCATGACTTTGTGGGTTGA 2349 0.4312 MSSLRPESHVAQQIRREKLRIQNSSQHLQEFPNNLEQLSSQPGFNNFDLLQVRNVRNANMLDEPVVYSSEIPNFSTSSNPLSAPKNALEYHHQEIGAAEPSNRLMMTHYGAFYHSIPAIHSSHTEQCELRSLGNWRNSAPHQGSDWFCNYASNANSLLSSELNNVSAYDELMDVQCRNASGDREIQKQLGVLHNPPPSSPLYQNALHDIVKSASISALSRQDATSLMQHNDHSIWVGNASEVELQQPSYGNQPNPLRFGWTNRAVDNTPSDSLPQSLSLSLSSNAQPKPSVSQHEQGSTSDDPHCLKYMKSSIVSRDCGKSLQDAVGMPSKCTFSYRSVGPLGPFTGYATILKNSRFLKSVQQLLDEICCLSGAKFPKSYDVSKRVSPEVSASTSADTVTVNETRVTAKGSNSGSSSTMLYNVSKENSADQGVGSSFGLSSRPDFQQKKAKLLYMQEEVTRQCKQYHLQMQMVVSSFESVAGLSSATPYIPMALKSVSKHFRCLKNSISDQLKLISEALGEDLSIPSTSTCSKADTAMARIRCSKDQSFLKNKSGRVTTDLLDPQQHVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHILASQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKATGTKENNGKHEGTSPGTQGDTSQPRMDKHLSNIGMDSIPENQFDGMEMGSSNVGESELNEEPWCQEKRSKVECQMTSNDMDGTLMGFVPYRRGGLEVGGLGSVSLTLGLRHGVEGVQHQQQLQEEQLRHRLGGHMIHDFVG 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00528 782 SMART prehox3 346 510 IPR006563 -
Spst5g00528 782 MobiDBLite consensus disorder prediction 639 667 - -
Spst5g00528 782 MobiDBLite consensus disorder prediction 648 667 - -
Spst5g00528 782 Pfam Homeobox KN domain 586 625 IPR008422 GO:0003677|GO:0006355
Spst5g00528 782 SUPERFAMILY Homeodomain-like 571 635 IPR009057 -
Spst5g00528 782 MobiDBLite consensus disorder prediction 245 303 - -
Spst5g00528 782 CDD homeodomain 569 630 IPR001356 GO:0003677
Spst5g00528 782 FunFam BEL1-like homeodomain protein 9 572 634 - -
Spst5g00528 782 Pfam Associated with HOX 351 509 IPR006563 -
Spst5g00528 782 ProSiteProfiles 'Homeobox' domain profile. 566 629 IPR001356 GO:0003677
Spst5g00528 782 MobiDBLite consensus disorder prediction 245 299 - -
Spst5g00528 782 Gene3D - 572 634 - -
Spst5g00528 782 SMART HOX_1 569 633 IPR001356 GO:0003677
Spst5g00528 782 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 252 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00528 Spst-Chr5 4223095 4228272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00528 346 638 Homeobox Transcription Factor Family AT2G16400 39.590 2.79e-61 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Spst5g00528 POX 5.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00528 - - gmx:100790583 1157.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00528 5 4223095 4228272 Spst5g00528 5 4223095 4228272 ECH
Spst5g00528 5 4223095 4228272 Spst11g01329 11 37797125 37802271 PCT