Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00526 ATGAACGTCATGAATTCAGTGACTGACAAGATTAGTGTAGAGAGGGGATATGGATCTTTTCAAGGCAATGAAGGTCCTTCAATGGTGCAAAACAAGGGGCCTCCTTCCCTGGCCATCAAGAAGGACCGCCACATAAAGGTCAATGGGAGAGACCGCCGTGTTCGTCTATCACCAATGTCTGCTGCTCGCATCTTCCAACTCACCCGTGAGCTCGGCAAGAAGACAGATGGTGAGACCATCGAATGGCTCCTACACAAGGCTGAGCCAGCCATCATTGCCGCCACTGGCACCGGCGTTATGCCTTCCACCACCTGCATGGCCAACACTGCCACCACCGCCACCACCTGCATGGCCAATACCACCGTCTCTGAGCCACCAGACCCAATTCCTGATGAGGATGCCAACTTAGTCAGAGGTGCTGCCTCTCCAACTACAGAGGAGCATATTTCACTCTTCCCTTTCGACTTTGATTCGGCGCAGTCTGATTTAGGATTTCTTGACAATTAA 507 0.5187 MNVMNSVTDKISVERGYGSFQGNEGPSMVQNKGPPSLAIKKDRHIKVNGRDRRVRLSPMSAARIFQLTRELGKKTDGETIEWLLHKAEPAIIAATGTGVMPSTTCMANTATTATTCMANTTVSEPPDPIPDEDANLVRGAASPTTEEHISLFPFDFDSAQSDLGFLDN 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00526 168 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 38 132 IPR005333 GO:0003700
Spst5g00526 168 Pfam TCP family transcription factor 40 118 IPR017887 -
Spst5g00526 168 ProSiteProfiles TCP domain profile. 40 94 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00526 Spst-Chr5 4186593 4187099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00526 32 102 TCP Transcription Factor Family AT1G69690 67.606 6.46e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Spst5g00526 TCP 2.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00526 - - pvu:PHAVU_005G132500g 192.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00526 5 4186593 4187099 Spst11g01325 11 37761724 37762218 PCT