Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00520 ATGACGATGAAGAAGGTTGTAAGAGCAAATCTCGGGTTGGGGTTGGAGATGTCGGGTCTGGGAAACCAGTGCACATTCTGCCCATTGATGATACCATTGAAGCCCCTCTTTGATTTACCTTTAACCAGAGCTCTAACAGTCTATTTTATGCCTGAATGCTTATGGTTGACTAGCTCTGGTGGATCTTCTTGTTTTTCTCATATTGATTACTTTATAAATCGTTTTATGTTTGAGAAAACATTAGGGCTTGTCTTTGAGAAACAATTGTCTATCTGCACTGATACTTATTTGTTTGATGCTTATGGTGTAGTAAGAAAAGGAGATCTGTTTCTTGTCAGGGGAGAGGACGAAGAAAGGCTGGACGAAGATGGTATGATGATGTGGGAGGTGTCAGGAAATAAATGGCTCAGATTCGTGAGTTCTGGGAAGACGCTAATAGTGAGAGCTGTAGCTCATGTAGCTGGAGCTTTCTTCAATTGTGTTGATGGACATGAGATTATGTCCAAACTTGCTGGAGAGAGTGAAAGCAGTCTCAGAAAAGCATTTGAAGATGCTGAAAGAATGCACCACCATCCATTATTTTTATTGATGAAATTGATTCCATGGTTGTTGAAGTACCAATGTCAGTTGGGATGCATTAGAGGTCTTGAAAATGTCAAGCGTGAACTGCAAGAGGATGTTTGGTCTATCACCACCAAAGGTGGTCTCGTCTATGGTCCTCCGGGATGTGGGAAAACTTTGCTAGCCAAAGCAATTGCGAATGAATGTCAAGCTAACTTCATCAGAGTGAAAGGTCAAGAATTTCTTACAATGTGGTTTGGTGAAAGTGAAGCTTATGTTAGAGCAATTTTTGACAAAGCTAGACAATCGGCTCCATTGTCCTCTTCTTTGACGAGCTCTCAAGTTTGTCTCTTCATACTTAGTCTGCCAAGTTATGTTACTATGTATGCTTTAGCCATGAGCAAATATTCAACTGAGAGAAGCACTGTTCGGGATGCTGGTGCTACTGCTGATAGAGTTCAGAATCAACATCTTACTGAAATGGTTGTCATGTCTGTCCAAAGACGGTGTTCAAAATTGGGGCAACTAACAGACCTGATATCATTGTGTCATTGGTGCTGA 1122 0.4118 MTMKKVVRANLGLGLEMSGLGNQCTFCPLMIPLKPLFDLPLTRALTVYFMPECLWLTSSGGSSCFSHIDYFINRFMFEKTLGLVFEKQLSICTDTYLFDAYGVVRKGDLFLVRGEDEERLDEDGMMMWEVSGNKWLRFVSSGKTLIVRAVAHVAGAFFNCVDGHEIMSKLAGESESSLRKAFEDAERMHHHPLFLLMKLIPWLLKYQCQLGCIRGLENVKRELQEDVWSITTKGGLVYGPPGCGKTLLAKAIANECQANFIRVKGQEFLTMWFGESEAYVRAIFDKARQSAPLSSSLTSSQVCLFILSLPSYVTMYALAMSKYSTERSTVRDAGATADRVQNQHLTEMVVMSVQRRCSKLGQLTDLISLCHWC 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00520 373 PANTHER AAA-FAMILY ATPASE 141 196 - -
Spst5g00520 373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 185 IPR027417 -
Spst5g00520 373 Gene3D - 205 360 IPR027417 -
Spst5g00520 373 Gene3D - 140 197 IPR027417 -
Spst5g00520 373 Pfam ATPase family associated with various cellular activities (AAA) 142 194 IPR003959 GO:0005524|GO:0016887
Spst5g00520 373 Pfam ATPase family associated with various cellular activities (AAA) 236 306 IPR003959 GO:0005524|GO:0016887
Spst5g00520 373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 292 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00520 Spst-Chr5 4145270 4148569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00520 196 348 Calmodulin-binding Proteins AT3G56690 32.680 1.10e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00520 K13525 - lpol:106469578 164.851