Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00516 ATGGCCAAGCTCAGTGACAGAAACAGCAAGAAAAGTGTAAGTGACATTGTGAAGTTCAAATTAGTGGAGAAGTTTCAGAAGAGACTCTTACCGGGGAGAAACAAAGAAGGGTCTGTCTCAAACTCAACCTACGTGCCAGATGACGTGAAGGAAGGACACTTCGCTGTGATTGCCGAGAGTGGAGGGGAACAAAAAAGGTTCGTGCTGCCACTAAGTTGTTTATCCAACCCTGCGTTTTTGAAGCTGTTGGAGCAAGCAGAAGAAGAATACGGATTTGATCATGAAGGTGCAGTGACCATTCCTTGCATGCCTAGTGAGCTTGAGAGGATACTGACTCAGCAATGGCATCAAGAAGGAACTCAAACTACTGGTGTAAGAAAGAGTTGTAGAAAATCCATGGTATTTTAG 408 0.4436 MAKLSDRNSKKSVSDIVKFKLVEKFQKRLLPGRNKEGSVSNSTYVPDDVKEGHFAVIAESGGEQKRFVLPLSCLSNPAFLKLLEQAEEEYGFDHEGAVTIPCMPSELERILTQQWHQEGTQTTGVRKSCRKSMVF 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00516 135 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 31 110 IPR003676 GO:0009733
Spst5g00516 135 Pfam Auxin responsive protein 34 111 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00516 Spst-Chr5 4121547 4121954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00516 25 102 Calmodulin-binding Proteins AT3G43120 46.914 6.51e-16 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00516 - K14488 gmx:102668167 184.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00516 5 4121547 4121954 Spst5g00516 5 4121547 4121954 ECH
Spst5g00516 5 4121547 4121954 Spst11g01313 11 37553369 37553770 PCT