Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00510 ATGTCAATGCAGAGATCCGGGTATGGCTCCGACGGAATATTCAGATCTCTCAGACCTTCAATCGTCTTCCCCAAACAACCTAACCTCTCACTCGTTTCCCACCTGTTCAACAGAGTCGCATCGTTTCCCTCCAAACACGCCCTTATCGATGCCGACTCTTCCCAAACCCTTTCATTCGCGCAGTTGAAGTCGCTAACTGTTAAAGTCTCCCACGGCCTCCTCCGTCTCGGCGTAGCCAAAAACGATGTCGTCCTCATCCTCGCCCCCAACGATATCCGCTACGTCGTCTGCTTCCTCGCCGTCACCTCCCTCGGGGCCGCCATCACCACCGTTAACCCGGCCTACACCGCTGCCGAGGTCGCCAAACAGGCCAAAGACTCCAATCCCAAACTTGTTGTCACCGTCCCAGAACTCTGGGACAAGCTCCAACACCTCAAACTTCCCGCGGTGTTCCTCAGCTCCCATGCGCACCCTCACGCGACTAGCTTCGACGAGCTGGTCCAACTTGCGGGGTCGCCGACCGATTTCCCGAAAGTTGACGTCAAGCAGAGTGACACGGCGGTGCTGCTGTACTCCTCCGGGACCACGGGCCTGAGCAAGGGCGTCATTCTCACCCACGGGAACTTCGTGGCGGCGTCGATGATGATTGGATTGGACGATGATTTGGCCGGCGAGATGCATAGCATCTTCCTCTGCGTTCTGCCGATGTTTCATGTGTTTGGTTTGACGGTGATTTCGTACGCGCAGCTTCAGAGGGGCAGTGCTGTGGTGTCTCTGAAGAAGTTTGAGTTTGAACTGGTTTTGAAGACGATTGAGAAGTTTAGGGTGACGCATTTGTGGGTTGTGCCTCCGATTATTCTTGCTTTGGCCAAACATGGTTTGGTCGATAAGTATGATCTTTCTTCGCTGAAGCATATTGGTTCTGGCGCTGCTCCTCTTGGAAAAGAGTTGATGGAGGAGTGTGCTAAACGTTTCCCTCGCGCCACTGTTTCTCAGGGATATGGTATGACTGAAACTTGTGGAATTGTTTCTGTGGAGAATACAAGGATGGGGATTCGGCATAGTGGCTCTGCGGGAATGCTTGTTGCCGGAGTGGAAGCTCAAATAGTCAGCGTGGATACGCTGAAGCCTCTCCCTCCTGGACAGATGGGGGAGATATGGGTACGGGGTCCTAATATGATGCAAGGTTATCACAACAATCCGCAAGCCACAAGATTGACAATAGATAAAAAGGGGTGGGTACATACAGGAGATCTTGGATATTTCGATGAGGATGGGCAACTTTTTGTTGTTGACCGTATCAAAGAACTGATCAAGTATAAAGGTTTTCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTTGTTTCTCACCCTGAAATACTTGATGCTGTTGTCATTCCATATCCTGATGCTGAAGCTGGTGAGGTTCCAGTTGCCTATGTGGTTCGCTCACCCAATAGTTCATTGACTGAGGAAGATGTTCAAAAGTTTATTGCTAATCAGGTAGCACCTTTCAAAAGATTACGAAGAGTGACATTCATCAATGCTGTTCCTAAGACTGCATCGGGAAAAATTCTCCGAAGAGAGCTTATTGAGAAAGTAAGATCCAAAATATGA 1617 0.5022 MSMQRSGYGSDGIFRSLRPSIVFPKQPNLSLVSHLFNRVASFPSKHALIDADSSQTLSFAQLKSLTVKVSHGLLRLGVAKNDVVLILAPNDIRYVVCFLAVTSLGAAITTVNPAYTAAEVAKQAKDSNPKLVVTVPELWDKLQHLKLPAVFLSSHAHPHATSFDELVQLAGSPTDFPKVDVKQSDTAVLLYSSGTTGLSKGVILTHGNFVAASMMIGLDDDLAGEMHSIFLCVLPMFHVFGLTVISYAQLQRGSAVVSLKKFEFELVLKTIEKFRVTHLWVVPPIILALAKHGLVDKYDLSSLKHIGSGAAPLGKELMEECAKRFPRATVSQGYGMTETCGIVSVENTRMGIRHSGSAGMLVAGVEAQIVSVDTLKPLPPGQMGEIWVRGPNMMQGYHNNPQATRLTIDKKGWVHTGDLGYFDEDGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPYPDAEAGEVPVAYVVRSPNSSLTEEDVQKFIANQVAPFKRLRRVTFINAVPKTASGKILRRELIEKVRSKI 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00510 538 Pfam AMP-binding enzyme C-terminal domain 449 524 IPR025110 -
Spst5g00510 538 FunFam 4-coumarate--CoA ligase 2 436 537 - -
Spst5g00510 538 SUPERFAMILY Acetyl-CoA synthetase-like 21 536 - -
Spst5g00510 538 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 533 - -
Spst5g00510 538 CDD 4CL 23 530 - -
Spst5g00510 538 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Spst5g00510 538 Gene3D - 436 537 IPR045851 -
Spst5g00510 538 Gene3D - 11 435 IPR042099 -
Spst5g00510 538 FunFam Long-chain-fatty-acid--CoA ligase FadD 15 435 - -
Spst5g00510 538 Pfam AMP-binding enzyme 37 440 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00510 Spst-Chr5 4023597 4027240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00510 3 538 Monolignol Biosynthesis Gene Families AT4G05160 66.912 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00510 K01904 - gmx:100797843 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00510 5 4023597 4027240 Spst5g00510 5 4023597 4027240 ECH
Spst5g00510 5 4023597 4027240 Spst11g01307 11 37512258 37516313 PCT