Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00509 ATGGGAAGAGCTCCTTGCTGTGACAAGGCCAATGTGAAGAGAGGACCATGGTCACCAGAAGAAGACTCAAAGCTGAAGGAGTACATCGAGAAGCATGGAACTGGAGGGAATTGGATAGCTCTTCCTCAGAAAGCTGGTCTAAGGAGATGTGGAAAAAGTTGCAGATTGAGATGGCTTAACTATCTTAGGCCCAACATTAAGCACGGGGAGTTCTCCGACGAGGAAGACAGAATAATTTGCAGCCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCTTCTCAGTTACCAGGCAGAACTGACAACGATATCAAGAACTATTGGAACACCAAGCTTAAGAGGAAACTCATGGGGTTGCTTCCTGCATCTCATCAAAGAATAGCACCCTATCAACACTCCTCCACTCAAAACCCTCCATCATCATTTCCTTCTCACTCATCTCTATCCTCCTCAATCTATAGGGACTACTGCAACAACTCTCATTATTACATCCCAGCACCAGCATCATCTTTCCCATGCCTTGAACCAATATCTGTTCCTTCAAGTAATTACACAAGCACAAGCACAAGCACCACCACCTCTCTCCCTTTTTACCAAAACCATGACCCTTTGGTCAATGTTAGTCCCATGCAGTATTACCCCACAACAGACAGTTCCATGCTTGTCTTTGGAAGTGAAACAAGTTGCAGTTCTTCTGATGGGAGCTGCAGCCAGGTCAGTCTTGGCAGAGAGATCAAACAAGAGGAAACGGGGTTTCAGAATTTCATGTTTGGAGATCAGCACATGAACAAATTCATGCTTAGTCAAGGCAACATGAATCACGATGGAGGTGAAGAGTACGTGAACCAATGGACAGAGAAGCCAAACGGGTGCTTCTTCCAAACGCAACAAACAGCATTGGATTATGATATTGAAGTAATTAAGCAACTGATTAGTAGTAACAGTAGCAGTAATAATAGTAATAATGGGTATTTTAGTATTGATGAAAACAAGACGGGGGAGAAGGGAGTGTACTACAACTACTGA 1029 0.4344 MGRAPCCDKANVKRGPWSPEEDSKLKEYIEKHGTGGNWIALPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIASQLPGRTDNDIKNYWNTKLKRKLMGLLPASHQRIAPYQHSSTQNPPSSFPSHSSLSSSIYRDYCNNSHYYIPAPASSFPCLEPISVPSSNYTSTSTSTTTSLPFYQNHDPLVNVSPMQYYPTTDSSMLVFGSETSCSSSDGSCSQVSLGREIKQEETGFQNFMFGDQHMNKFMLSQGNMNHDGGEEYVNQWTEKPNGCFFQTQQTALDYDIEVIKQLISSNSSSNNSNNGYFSIDENKTGEKGVYYNY 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00509 342 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Spst5g00509 342 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Spst5g00509 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Spst5g00509 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Spst5g00509 342 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Spst5g00509 342 SMART sant 67 115 IPR001005 -
Spst5g00509 342 SMART sant 13 64 IPR001005 -
Spst5g00509 342 FunFam Transcription factor RAX3 7 68 - -
Spst5g00509 342 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Spst5g00509 342 Gene3D - 69 140 - -
Spst5g00509 342 FunFam Transcription factor MYB36 70 140 - -
Spst5g00509 342 CDD SANT 16 62 IPR001005 -
Spst5g00509 342 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Spst5g00509 342 PANTHER OS09G0431300 PROTEIN 1 291 - -
Spst5g00509 342 CDD SANT 70 113 IPR001005 -
Spst5g00509 342 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00509 Spst-Chr5 4010186 4011812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00509 1 119 MYB Transcription Factor Family AT5G57620 87.395 8.11e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst5g00509 Myb_DNA-binding 9.6e-15 CL0123