Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00498 ATGGATGAAATTCACCAAAACACACTGACGTACATCAATGATTTTGAGCTTTACGACTTCATTGACAATCCAAATTTTGATCAGTTCATCAATTTGATCCGTGGGGAGAATGAAGATGCCAACTGTGAATTTGGTTCTGACCTCATCAATGATTGTTTTGTTAACAATCAGCTCCATTCATGTCCTGCAGACCCTTTTGATCAGAACAATAACAATGCTGTGAATGTCTATGAGCCTAGCTCCACATTTAGCTCCTTCTCTTGTTTTGATGGGGAGATCAAGGGAGAAGGAGAAGGAGAAGGAGAAGAAGAACATGATGGAGCGCATTCTTCTGAAACAACAACGACAACAACAACTACCAAGAATGATGACTCCAAATCGAAACTGAAAACTGATAGGTCCAAGACTCTCATTTCTGAGAGGAGAAGGAGAGGCCGAATGAAGGAGAAGCTTTACGCATTGCGTTCTTTGGTTCCCAACATAACTAAGATGGACAAGGCTTCTATAATTGGAGATGCAGTAGCATACGTGCATGATCTTCAAGCTCAAACTAGGAAGCTGAAGGCTGAAGTTGCAGGACTCGAAGCATCCTTATTAGTGTCTGAAAATTATCAAGGATCAATTAACAATCCCAACAATGTGCAAGTTGCCCGTAATAGTCATCCAATCTGCAAGAAGATCATGCAGTTGGAGATGTTGCAAGTGGAGGAAAGAGGGTATTATGCAAAAATAGTGTGCAACAAAGGAGAAGGAGTGGTTGCATCGTTGTTCAGGGCTCTTGAGTCTCTTGCAGGTTTTAATGTTCAGAATTCAAACTTGGGTACAGTTTGTGACAGTTTTCTACTTACATTTACACTGAACATAAAAGGATCTGAAGCAGAGATTAACCTGGCAAATTTGAAGCTATGGGTGACTGGCGCCCTTCTGAATCAAGGATTTGAATTCGAGGCATCTTTCTCTGGTTGA 966 0.411 MDEIHQNTLTYINDFELYDFIDNPNFDQFINLIRGENEDANCEFGSDLINDCFVNNQLHSCPADPFDQNNNNAVNVYEPSSTFSSFSCFDGEIKGEGEGEGEEEHDGAHSSETTTTTTTTKNDDSKSKLKTDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVAYVHDLQAQTRKLKAEVAGLEASLLVSENYQGSINNPNNVQVARNSHPICKKIMQLEMLQVEERGYYAKIVCNKGEGVVASLFRALESLAGFNVQNSNLGTVCDSFLLTFTLNIKGSEAEINLANLKLWVTGALLNQGFEFEASFSG 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00498 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 204 IPR036638 GO:0046983
Spst5g00498 321 Gene3D - 121 197 IPR036638 GO:0046983
Spst5g00498 321 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 127 197 - -
Spst5g00498 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Spst5g00498 321 MobiDBLite consensus disorder prediction 94 110 - -
Spst5g00498 321 MobiDBLite consensus disorder prediction 94 136 - -
Spst5g00498 321 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 13 311 - -
Spst5g00498 321 Coils Coil 177 197 - -
Spst5g00498 321 Pfam Helix-loop-helix DNA-binding domain 138 181 IPR011598 GO:0046983
Spst5g00498 321 SMART finulus 137 186 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00498 Spst-Chr5 3941678 3943142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00498 7 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 52.201 7.08e-101 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst5g00498 HLH 4.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00498 K26214 - gmx:100805451 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00498 5 3941678 3943142 Spst5g00498 5 3941678 3943142 ECH
Spst5g00498 5 3941678 3943142 Spst11g01281 11 37274434 37275757 PCT