Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00494 ATGTTGTCAGAAATATTAGACATGGAAGGGATGGCCATGGAGGAACTTGTCTCATGTAACAACGATCCCACCAACATAGCCAAAGGAAAGCGCACAAAGCGGCGTTTGAGGCCTTTGTCGCCTTGTGCTCTTGTCACCACCGCCACTGTCACCGCCACCACCGCTATGACGTCAAGCTGTTCAAGTGCTTCTGGCGGTGGTGGTGGGTCGTTTTCATCTACCGCCTTGGAGGAGGAAGAGGAAGACATGGCTAACTGTTTGATTCTCCTGGCGCAAGGAAGAGGAGGAAGGGATGCTCTTCCTCACAAGGACCTGTGTGATGATGTCAAGGCAGAGAAAGGTGGCAACAGAATTGATTTTTATGTTTATGAGTGCAAAACATGCAACAGAACATTCCCTTCTTTTCAAGCTCTCGGTGGCCACAGGGCGAGTCACAAGAAGCCAAAGGTTGAGGAAAAGAAGTCCCCGCCACCATCGTTGCCGTTGCCACTGCCACCGTCGTCATCGTCATCGCAACTATTCAATTTTGAAGAAGCAAAACAAAATCAAATGAAGATTAACCCTTCGGTTTCGCTTCTATTAGGGTGTGGAAATAATAGGGGTGGTTTAAATTTCAATGGGAACAAGTCCAAGATTCACGAGTGTTCCATTTGTGGGTCAGAATTCACATCAGGGCAAGCATTGGGTGGTCACATGAGGAGGCATAGGTCAGCTAACAACAACAATAACAGCAACAACAATAATAACAATAATACTGTTGTTCAGACAGCGACAACAACTTGTGATGGTGCTGTTGAAGTTAAGCCTCGAAATGTTCTAGAATTAGATCTCAACCTTCCGGCGCCCGAGGACGACCTCCGAGACTCGAAGTTTCAGTTTCCGGCGAATCAGAATTCTTTGATGCTGTCGGCTGCTCCGGCTTTGGTGGGATGCCATTATTAG 942 0.4745 MLSEILDMEGMAMEELVSCNNDPTNIAKGKRTKRRLRPLSPCALVTTATVTATTAMTSSCSSASGGGGGSFSSTALEEEEEDMANCLILLAQGRGGRDALPHKDLCDDVKAEKGGNRIDFYVYECKTCNRTFPSFQALGGHRASHKKPKVEEKKSPPPSLPLPLPPSSSSSQLFNFEEAKQNQMKINPSVSLLLGCGNNRGGLNFNGNKSKIHECSICGSEFTSGQALGGHMRRHRSANNNNNSNNNNNNNTVVQTATTTCDGAVEVKPRNVLELDLNLPAPEDDLRDSKFQFPANQNSLMLSAAPALVGCHY 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00494 313 ProSitePatterns Zinc finger C2H2 type domain signature. 125 145 IPR013087 -
Spst5g00494 313 SUPERFAMILY beta-beta-alpha zinc fingers 122 235 IPR036236 -
Spst5g00494 313 ProSitePatterns Zinc finger C2H2 type domain signature. 215 235 IPR013087 -
Spst5g00494 313 SMART c2h2final6 123 145 IPR013087 -
Spst5g00494 313 SMART c2h2final6 213 235 IPR013087 -
Spst5g00494 313 Gene3D Classic Zinc Finger 121 235 - -
Spst5g00494 313 Pfam C2H2-type zinc finger 122 148 - -
Spst5g00494 313 Pfam C2H2-type zinc finger 213 237 - -
Spst5g00494 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 240 IPR013087 -
Spst5g00494 313 PANTHER ZINC FINGER PROTEIN ZAT5 74 298 - -
Spst5g00494 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 150 IPR013087 -
Spst5g00494 313 MobiDBLite consensus disorder prediction 139 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00494 Spst-Chr5 3914287 3915228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00494 21 313 C2H2 Transcription Factor Family AT2G28200 42.295 3.76e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst5g00494 zf-C2H2_6 2.5e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00494 - - gmx:100788646 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00494 5 3914287 3915228 Spst5g00494 5 3914287 3915228 ECH
Spst5g00494 5 3914287 3915228 Spst1g02850 1 37069961 37070776 ECH
Spst5g00494 5 3914287 3915228 Spst11g01279 11 37254791 37255720 ECH
Spst1g02850 1 37069961 37070776 Spst5g00494 5 3914287 3915228 ECH
Spst7g01007 7 17847371 17848177 Spst5g00494 5 3914287 3915228 ECH
Spst5g00494 5 3914287 3915228 Spst11g01279 11 37254791 37255720 PCT