Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00493 ATGATTTCAAGGGTAAGTTCTACCTTCCAAAGTCATCATCAAGGGCTTCAGATGTTCCCTGACCCAGAAGATTTTGCGTCACCCTCTGTGGAATCTGGCTCATCTTCACACTCCAGTTCCCTCCTCTTCAATCTCTCTATTCTGAAGGACAAGGTCGGTGAGGTGCAGACCCTGGTAGGGGTTATTCTCTCCCCAAATCAAAGCCTACCCGAGTCAACTTCCATGGCTATATCCAGCATGAACTCTACAATCCAAGAAGTCATAGTCACTGCCACATCAATGATGTTCACCTGCCAACAGATGGCTCTCACTACCCCTCCAGGTACTAATAATATTACTACATGCACCAACAAATTGCACCAGCTGAACAAGTTGCCTCACTCAAATTTTGGCACAAATAGAAGTGTGCTTGGTAACATAGGCATAGATATTAGTGACCCTCATCAGGGTTTATTTTCTAGCACTGAGTCAGAGGCACTGGACTGGTTTACTGACAGCTATAACAATAACGACGAGAATAGCAATATTAGTAAGACTAAGGAAGATGATCCAAGCGTTGCGATTAGTGAAAACAATATGATTATTGGTAGAGGTGGACTACTGTCTCCAAGGGATGAACATGAACCTAATGAAGAAGGGTATAGTCATAGAGGGCTTTCACCAAATACTAGTGACATAATTGAATTGGATGCTGGGGATTTGTTGGCTAAGTACACGCACTATTGCCAAGTTTGTGGCAAAGGCTTCAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGATGAGTACAAGACCAATGCTGCCTTGAGCAACCCAATTAAGAATAAGAATAAAGGGATTTTAGAAGGGGAAAGAGAGTGTTTGATGAGTGTGAAGCCAAAGAGATATTCGTGTCCTCAAGAAGGGTGTAGGTGGAACCAAAAGCACGCCAAGTTCCAACCATTGAAGTCTATGATTTGTGCTAAGAATCATTACAAGAGAAGCCATTGCCCCAAAATGTACGTTTGCAAGAGGTGCAACCAGAAGCAGTTCTCTGTGCTCTCTGATCTGAGGACACATGAGAAACACTGTGGGGATCTCAAGTGGCAGTGCTCTTGTGGCACTTCGTTTTCTCGGAAAGACAAACTCATGGGCCATGTTACTTTGTTCGTGGGGCACCAACCAGCTATCAACAATATTGGTCTGTCATCATACTCAGGAAAATTGGAGCAGCACACATTGCAAATGCAGATTGACGCTGGCTCAAGATGA 1260 0.4421 MISRVSSTFQSHHQGLQMFPDPEDFASPSVESGSSSHSSSLLFNLSILKDKVGEVQTLVGVILSPNQSLPESTSMAISSMNSTIQEVIVTATSMMFTCQQMALTTPPGTNNITTCTNKLHQLNKLPHSNFGTNRSVLGNIGIDISDPHQGLFSSTESEALDWFTDSYNNNDENSNISKTKEDDPSVAISENNMIIGRGGLLSPRDEHEPNEEGYSHRGLSPNTSDIIELDAGDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPIKNKNKGILEGERECLMSVKPKRYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTSFSRKDKLMGHVTLFVGHQPAINNIGLSSYSGKLEQHTLQMQIDAGSR 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00493 419 SMART c2h2final6 337 359 IPR013087 -
Spst5g00493 419 SMART c2h2final6 240 262 IPR013087 -
Spst5g00493 419 SMART c2h2final6 299 332 IPR013087 -
Spst5g00493 419 MobiDBLite consensus disorder prediction 1 15 - -
Spst5g00493 419 FunFam Zinc finger protein 574 239 264 - -
Spst5g00493 419 SUPERFAMILY beta-beta-alpha zinc fingers 238 265 IPR036236 -
Spst5g00493 419 ProSitePatterns Zinc finger C2H2 type domain signature. 242 262 IPR013087 -
Spst5g00493 419 Gene3D Classic Zinc Finger 229 296 - -
Spst5g00493 419 MobiDBLite consensus disorder prediction 1 32 - -
Spst5g00493 419 MobiDBLite consensus disorder prediction 201 221 - -
Spst5g00493 419 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 29 395 IPR044300 GO:0010044|GO:0010447
Spst5g00493 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 240 267 IPR013087 -
Spst5g00493 419 Gene3D Classic Zinc Finger 335 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00493 Spst-Chr5 3905606 3906865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00493 25 392 C2H2 Transcription Factor Family AT5G22890 45.358 2.52e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst5g00493 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00493 - - gsj:114375424 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00493 5 3905606 3906865 Spst5g00493 5 3905606 3906865 ECH
Spst5g00493 5 3905606 3906865 Spst11g01276 11 37239700 37240815 PCT