Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00490 ATGGCGAAGGGCACCGATTCCGACGAGTTCGTGTTACTTTCAAGGGTCCGTACGGGTCTGAAGAGGGAGTTTGCGTTCGCAATGAAGGCTCAATCTGAGATCTGCGGCGGTTCTCTTGGTCGAACGCGGGCCAGCAAGAACCGGCCCGAGGCTCCTGTTCAGACGGCTTCTACCCGTAAACGGTACAGGAAGACCGCGGAGCCGAAAGCGTCGGAGGACGTCATGAGCGAGGAAGAGGCTAAGAGCGACGTGGTGGATCTTCAGAGCGACGATGAACCAAAGAATAATCACGCGGGAGAATCAGAATCTGCGACAATGTTGGATTGTGAAGAGGAACCGAAGAGTGATGTGGCGATGGAAACTGTCATCAGCGAAGAGGAACCGAAGGTGTTGGAAACAATTATCAGCGAAGAGGAGCCGAAGGTGTTGGAAACAATTATCAGCGAAGAGGAGCCGAAGGTGTTGGAAACTATTATCAGCGAAGAGGAGCCGAAGGTGTTGGAAACTATTATCAGTGAGGAGGAACCGAAGGTGTTGGAAACTGTTATGGGCGAAGAGGAGCCAAAGGTGTTGGATAGTATTGTCAACGAGGAGGAACCTGTTGTGGCGGAGACGTTGAAGGAAGAGGTTGTGAATGAGATGGTACATCCTGTTAGCGAAATTAACGAGGAATCAGCAGAGAAGGATATTTCGGGAGAGAAGGATCCTTGTGGGGAAACCCTTGTTTTGGAGAATGATGGTGACAAGGGGAAGAAAAAGAAGAAGAGAATGAAAAAGCGATTGGAGGGGCCTCAGACTGTAAGAAGGTTTACGCGGTCGGCATTGAAGGTAAATTCCGAGGAAACAAACGATAGAAAATATGTTGGTGTGGTTGGACATAATGATGGTATTAAAAGGGAAACAGAAACCGAAGCTTCGGTGTTAATGACTACTCCTAGTTCGGGAAGATTTTCGAATTCTAGGTTGAGGAAGTTTCCTACCAAGTTGAAGGATCTTTTGGCTACGGGGATTCTTGACGAAATGCCGGTGAGGTACATGAAGGGATCAAAGGCACGGAAAAATGGAGAAACAGGGCTTCAAGGAGTGATTCGACACTCTGGGGTTTTGTGCTTTTGTGAGAGTTGTAGGGGGGCTGAGGTAGTCACGCCCACTGTGTTTGAGTTGCATGCCGGCAGTGCAAATAAACGACCCCCTGAGTATATTTACATGGATAGTGGGAATTGTGGAAATAACCTCCGTGATGTCATGAATGCCTGCTGCGATTTGCCATTGGAGTCAATGGAGGAAGCCGTCCAAAAACTCCTTGGAGCGTGCAAGGGTGTGTCAAAGCTAGTATGTGAATCTTGCATATTAAGCCCCCCTCAAACAGCCACAGCTAGTAGCAAAAAAATTTCACCCCCAGTGCAACCAAGATCACCAGAGACAGTAATGGTTCAAAAATTAGACAATGTGATGCAGCCAACTTCATTCGACAATGGGGTGCAGTTAATTTCACTGGATAATGGTGTACTGCCAAACTCGTTAAACAATTGGGTGCAGCCAAACTCATTAAACAGTGAGATGAAGCCAACTTTGTTAAATAGTGGGATGAAGCCAAATTCATTAAAGAATGGGATGAAGCACAGTGCATCTCGTGGTAAGAGTCAGGGAAGACTTACTAGGAAGGATCTGCGCTTGCACAAGTTGGTATTTGAGGCAGATGTTTTGCCAGATGGAACTGAAGTAGCCTACTATGCTCATGGACAGAAACTGTTGGTTGGTTACAAAAAGGGATATGGAATATTTTGTACCTGCTGCAACTCTGAGGTCAGTGCCTCTCAGTTTGAAGCACATGCTGGCTGGGCATCTCGACGAAAGCCTGGTACTTGGTATTGTAAGTATTGCCAGAATGTTTTCCAGAAAGATAGGCAGGGGCAACACAATGTGAATGCTCTGGCAGCTGGAAGGATTGAAGGAACTGATATTTTGGAACAGATGAACCCAAGATGTATACGGGTTGTCAAAACTGTGGAAGTTGACCATGGTGGATGTGCCTTGTGCAGTCGTCACAATTTCAGTAAAAGCTTTGGTCCTCGAACAGTAATTATTTGTGATCAGTGTGAGAAAGAATATCATGTTGGATGTTTGAAGGATCATAACATGCAGAACCTTGAGGAATTGCCTGAAGGGAACTGGTTTTGTAGCACAACTTGCACTCAAATTCATTCTGCTTTGGTGAGTTTGGCGGCTTGTGGGGAAAAAAATATTCCAGATTCCCTTCTAAGTTTGATAAAAAAGAAGCACGAAGAGAAAAGTGTAGACATTGATGGTGGTCTTGATGTTAAGTGGAGGGTTATAAACTGGAAACTAGATGATTCTGTTGAAAATAGGAAAAGGCTTTCAAAAGCTGTTGCTATTTTCCATGAAAGGTTTGATCCTATAGTTGATTCAACATCTGGCCGAGATTTCATTCCAACAATGTTGTTTGGTAGGAACATTCGGGGTCAAGATTTTAGTGGAATGTACTGTGCAGTGCTTACTGTCAATGGCGATATTGTGTGCGCTGGAGTGTTTCGTGTCTTTGGGTCAGAAATTGCAGAGCTTCCGTTGGTGGCGACAACTTCTGATCAACAAGGACAGGGCTATTTTCAGTGTCTATTTTCTTGTATTGAGACGTTACTTCGATCTTTAAATGTGAAAAACCTTGTCCTACCAGCCGCTGATGAAGCCGAATCAATATGGACTGGTAAATTTGGGTTTTCAAAGCTGCCACAAGATGAGGTATCCGTATTGTAA 2775 0.4519 MAKGTDSDEFVLLSRVRTGLKREFAFAMKAQSEICGGSLGRTRASKNRPEAPVQTASTRKRYRKTAEPKASEDVMSEEEAKSDVVDLQSDDEPKNNHAGESESATMLDCEEEPKSDVAMETVISEEEPKVLETIISEEEPKVLETIISEEEPKVLETIISEEEPKVLETIISEEEPKVLETVMGEEEPKVLDSIVNEEEPVVAETLKEEVVNEMVHPVSEINEESAEKDISGEKDPCGETLVLENDGDKGKKKKKRMKKRLEGPQTVRRFTRSALKVNSEETNDRKYVGVVGHNDGIKRETETEASVLMTTPSSGRFSNSRLRKFPTKLKDLLATGILDEMPVRYMKGSKARKNGETGLQGVIRHSGVLCFCESCRGAEVVTPTVFELHAGSANKRPPEYIYMDSGNCGNNLRDVMNACCDLPLESMEEAVQKLLGACKGVSKLVCESCILSPPQTATASSKKISPPVQPRSPETVMVQKLDNVMQPTSFDNGVQLISLDNGVLPNSLNNWVQPNSLNSEMKPTLLNSGMKPNSLKNGMKHSASRGKSQGRLTRKDLRLHKLVFEADVLPDGTEVAYYAHGQKLLVGYKKGYGIFCTCCNSEVSASQFEAHAGWASRRKPGTWYCKYCQNVFQKDRQGQHNVNALAAGRIEGTDILEQMNPRCIRVVKTVEVDHGGCALCSRHNFSKSFGPRTVIICDQCEKEYHVGCLKDHNMQNLEELPEGNWFCSTTCTQIHSALVSLAACGEKNIPDSLLSLIKKKHEEKSVDIDGGLDVKWRVINWKLDDSVENRKRLSKAVAIFHERFDPIVDSTSGRDFIPTMLFGRNIRGQDFSGMYCAVLTVNGDIVCAGVFRVFGSEIAELPLVATTSDQQGQGYFQCLFSCIETLLRSLNVKNLVLPAADEAESIWTGKFGFSKLPQDEVSVL 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00490 924 SUPERFAMILY FYVE/PHD zinc finger 669 729 IPR011011 -
Spst5g00490 924 PANTHER AUTOIMMUNE REGULATOR 621 922 - -
Spst5g00490 924 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 832 917 IPR016181 -
Spst5g00490 924 Pfam Tify domain binding domain 361 419 IPR032308 -
Spst5g00490 924 Pfam Tify domain binding domain 587 621 IPR032308 -
Spst5g00490 924 MobiDBLite consensus disorder prediction 60 98 - -
Spst5g00490 924 MobiDBLite consensus disorder prediction 37 115 - -
Spst5g00490 924 MobiDBLite consensus disorder prediction 222 251 - -
Spst5g00490 924 MobiDBLite consensus disorder prediction 222 262 - -
Spst5g00490 924 SMART PHD_3 676 732 IPR001965 -
Spst5g00490 924 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 671 734 IPR013083 -
Spst5g00490 924 Gene3D - 773 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00490 Spst-Chr5 3889984 3896622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00490 621 922 PHD Transcription Factor Family AT2G36720 53.795 3.97e-106 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00490 - - var:108333944 795.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00490 5 3889984 3896622 Spst5g00490 5 3889984 3896622 ECH
Spst5g00490 5 3889984 3896622 Spst11g01272 11 37220923 37222140 PCT