Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00488 ATGGCTGTTGCTGGAGTGCATAATGTGACTGCGCTCGAATCTACTTTCCTGAGGGAATCCCTTTCTCAGTCATCTGGGAGGCAAGGAGATGGAGGGAGGGGAGGCACCCGGTCGTCTTCGGTCTTGCAAATGTGGAGAGAGATTGAGGATGAGCAGGTAGTGAGACAAGTTCAAGGAAGACCTGGGGAGGTTTTACTCCAACAAAGGAGTGATGAGTTGGTTGTGGACCCCTCACTGGAAAATATGCCAGATAGCAACCAGAGAGAAGCGCATGGAATAGAGGATGCAGGTTTGGGTGAGAATGATTCTGAAACCTGGTCACAAAGTCAGAATGAGTTCCATGACGAACATGAGGAATTAAACAATTCTAGTCACGAAAACTCCTCTGATCTTGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATATTCAGGGAATGGATGAATAGTGGCTCTAGGGATCGGTCATCGAATAATTCCCAAGGAAACAGGGGAGAATGGCTCGGGGAAACTGAGCAGGAAAGGGTAAGTATCATAAGGGAGTGGGTACAGATGAGTAGCCAGCAGAGAGGTATTTCTTCTGGAGAAAATAGAGAAGACCAATCTTCTGAAACTGCTACCCAAATTGAATGTGTTCGTGATGGATTTGTTGTTAATCAGAATGAGGGTCAAACTGAACATACACGAAGGGGAATCCGTAAATTATGTGGCAGACAGGTACTGCTTGATATGCTTAAGAAGGCTCAGATGGAAAGGCAAAGGGAAGTTCAGGAATTGTTGGACCATCGGGTTGTATCTCATTTCCCCCATCGTAATCGTATTCAGGCCTTGCTTAGAGGCAGTTTCTTGAGAAATGATAGATCGATTGATAATAGCAGGTCCACTTCCATTGCAGAAAGTGAATTAGGCTTACTGAGACAAAAGCAGACTGTATCAGGTCTAAGGGAGGGGTTCTTTTTTAGAAAGGACAATTTTGGTTGTAGTCAAGCAGCCAGTAACCCATCTGATACCTCTTCCGTGGGTGATATTGATGTTAATACAATCGACCAAACTGGAGCTAGCAGCTCACAAGCAGTCCCAACTGTACATTCTGAACAATCTGGGCCTAATAACAATGGGAGTGACGGACCTGAGATACCATGTGATAAGATGTGTTCACAAGTAACCCCTTGTGAGATATTAGATTGGCAAGGCTCTGCCGCTCATGTAGAAACAAGAGATTGGGAATCATCTTCCAGTATAAGGGTTGAAAGAGGAGATGGCGCTGGACAAACTGTTGCTGGTCCGACTGAAGATCCTTCTGATGAGCTTACCCAACAAAGCTTGCAAATTGAAGATACAGAGGATGGCAACATGATCATGCAAGACTTAAGCGAGGTACATACTGAGCAATCTCAGTGGGGAGATATAACTAATGATGAAAGCAATTTATCAAATCAAGATGATCGTGTATATAGCAATATTGTTGGTGATATAGATTCGATTGAATCTATTGCTCTGGAAGTAGAACAACAGGAAGAAGTTATTGTTGAAAATGAAAGAAGTGACTGGCATCAAAGTGTGGATGATCATCAGCTCAGTAACGCAACAAATGAATGGCCCCAAAACATATTGGGTAGCGAAGATGGAGAAAATTCTCGTATGCAAGAGCAAGAAGCCCCTGAAGTGTGGCAAGAGGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTAGGCGGACCTTCTGATAATGAAGTAGCTCCAGTTGGTAGAATTCATGGGTTTTATTTTCCCGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAATTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTTCGCAGCAGTTTTCGTGACAGTCTTGACCAATTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCATGTTGAATGGGAGCTGCAGGAAACAACCCCTTCTTCTCCCTTGGCAGAACAAGACTCAGAGCAACAAACTAGGGATCCAGTTGTTGGTCCTCAGGGTACTGTTAACAGCTCACTTGACCGACCCTTGCCACCAACGCCTCCACCTCAGCCTTTATGGGATCGACACTCTCGCCATGACAATTGGTCACAAAGTGACATAAATAATCAGCGCCTAGGAATTGTGCGTTCATTTGCGGGACATAACTGCTTTTCTTTAGCTGATGAGTGGGATATTGTTAATGACTTGAGAATTGACATGGTTAGGCTACAGCAACGAATGAATAATATGCAAAGAATGCTGGAGGCCTGTATGGATATGCAGCTCGAGTTACAACGCTCAATAAGACAAGAAGTCTCTGCAGCCTTAAATCGCTCAACTGGTTCATCAGGAATAGATGACCGTGTTTCACCAGACGATGAATCTAAATGGGAATGTGTGAGGAAAGGACTTTGTTGTATATGCTGTGAAAGCAATATCGATTCTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGTGCGAATGATTTGCACCAAAGTAGAAGAAAGTGTCCAATGTGTCAAGCACCAGTGGTGGAAGTGATCCGAGCTTATTCTATACAATAG 2559 0.4392 MAVAGVHNVTALESTFLRESLSQSSGRQGDGGRGGTRSSSVLQMWREIEDEQVVRQVQGRPGEVLLQQRSDELVVDPSLENMPDSNQREAHGIEDAGLGENDSETWSQSQNEFHDEHEELNNSSHENSSDLGEVERERVRQIFREWMNSGSRDRSSNNSQGNRGEWLGETEQERVSIIREWVQMSSQQRGISSGENREDQSSETATQIECVRDGFVVNQNEGQTEHTRRGIRKLCGRQVLLDMLKKAQMERQREVQELLDHRVVSHFPHRNRIQALLRGSFLRNDRSIDNSRSTSIAESELGLLRQKQTVSGLREGFFFRKDNFGCSQAASNPSDTSSVGDIDVNTIDQTGASSSQAVPTVHSEQSGPNNNGSDGPEIPCDKMCSQVTPCEILDWQGSAAHVETRDWESSSSIRVERGDGAGQTVAGPTEDPSDELTQQSLQIEDTEDGNMIMQDLSEVHTEQSQWGDITNDESNLSNQDDRVYSNIVGDIDSIESIALEVEQQEEVIVENERSDWHQSVDDHQLSNATNEWPQNILGSEDGENSRMQEQEAPEVWQEDGGFQEAVEIWLGGPSDNEVAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRDSLDQLIQSYVERQGHAHVEWELQETTPSSPLAEQDSEQQTRDPVVGPQGTVNSSLDRPLPPTPPPQPLWDRHSRHDNWSQSDINNQRLGIVRSFAGHNCFSLADEWDIVNDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSGIDDRVSPDDESKWECVRKGLCCICCESNIDSLLYRCGHMCTCSKCANDLHQSRRKCPMCQAPVVEVIRAYSIQ 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00488 852 MobiDBLite consensus disorder prediction 19 39 - -
Spst5g00488 852 MobiDBLite consensus disorder prediction 147 169 - -
Spst5g00488 852 Coils Coil 728 755 - -
Spst5g00488 852 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 852 - -
Spst5g00488 852 ProSiteProfiles Zinc finger RING-type profile. 800 839 IPR001841 -
Spst5g00488 852 MobiDBLite consensus disorder prediction 186 205 - -
Spst5g00488 852 MobiDBLite consensus disorder prediction 644 675 - -
Spst5g00488 852 MobiDBLite consensus disorder prediction 96 134 - -
Spst5g00488 852 CDD mRING-HC-C3HC5_NEU1 800 849 - -
Spst5g00488 852 MobiDBLite consensus disorder prediction 401 435 - -
Spst5g00488 852 MobiDBLite consensus disorder prediction 148 166 - -
Spst5g00488 852 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 780 850 IPR013083 -
Spst5g00488 852 SUPERFAMILY RING/U-box 799 845 - -
Spst5g00488 852 MobiDBLite consensus disorder prediction 644 696 - -
Spst5g00488 852 MobiDBLite consensus disorder prediction 109 134 - -
Spst5g00488 852 MobiDBLite consensus disorder prediction 351 373 - -
Spst5g00488 852 Pfam Zinc finger, C3HC4 type (RING finger) 797 844 - -
Spst5g00488 852 MobiDBLite consensus disorder prediction 351 380 - -
Spst5g00488 852 MobiDBLite consensus disorder prediction 68 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00488 Spst-Chr5 3876956 3881734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00488 800 846 C3H Transcription Factor Family AT3G06140 38.298 4.16e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00488 - - gmx:100804887 1332.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00488 5 3876956 3881734 Spst5g00488 5 3876956 3881734 ECH
Spst5g00488 5 3876956 3881734 Spst11g01269 11 37171150 37174888 PCT