Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst5g00488 | ATGGCTGTTGCTGGAGTGCATAATGTGACTGCGCTCGAATCTACTTTCCTGAGGGAATCCCTTTCTCAGTCATCTGGGAGGCAAGGAGATGGAGGGAGGGGAGGCACCCGGTCGTCTTCGGTCTTGCAAATGTGGAGAGAGATTGAGGATGAGCAGGTAGTGAGACAAGTTCAAGGAAGACCTGGGGAGGTTTTACTCCAACAAAGGAGTGATGAGTTGGTTGTGGACCCCTCACTGGAAAATATGCCAGATAGCAACCAGAGAGAAGCGCATGGAATAGAGGATGCAGGTTTGGGTGAGAATGATTCTGAAACCTGGTCACAAAGTCAGAATGAGTTCCATGACGAACATGAGGAATTAAACAATTCTAGTCACGAAAACTCCTCTGATCTTGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATATTCAGGGAATGGATGAATAGTGGCTCTAGGGATCGGTCATCGAATAATTCCCAAGGAAACAGGGGAGAATGGCTCGGGGAAACTGAGCAGGAAAGGGTAAGTATCATAAGGGAGTGGGTACAGATGAGTAGCCAGCAGAGAGGTATTTCTTCTGGAGAAAATAGAGAAGACCAATCTTCTGAAACTGCTACCCAAATTGAATGTGTTCGTGATGGATTTGTTGTTAATCAGAATGAGGGTCAAACTGAACATACACGAAGGGGAATCCGTAAATTATGTGGCAGACAGGTACTGCTTGATATGCTTAAGAAGGCTCAGATGGAAAGGCAAAGGGAAGTTCAGGAATTGTTGGACCATCGGGTTGTATCTCATTTCCCCCATCGTAATCGTATTCAGGCCTTGCTTAGAGGCAGTTTCTTGAGAAATGATAGATCGATTGATAATAGCAGGTCCACTTCCATTGCAGAAAGTGAATTAGGCTTACTGAGACAAAAGCAGACTGTATCAGGTCTAAGGGAGGGGTTCTTTTTTAGAAAGGACAATTTTGGTTGTAGTCAAGCAGCCAGTAACCCATCTGATACCTCTTCCGTGGGTGATATTGATGTTAATACAATCGACCAAACTGGAGCTAGCAGCTCACAAGCAGTCCCAACTGTACATTCTGAACAATCTGGGCCTAATAACAATGGGAGTGACGGACCTGAGATACCATGTGATAAGATGTGTTCACAAGTAACCCCTTGTGAGATATTAGATTGGCAAGGCTCTGCCGCTCATGTAGAAACAAGAGATTGGGAATCATCTTCCAGTATAAGGGTTGAAAGAGGAGATGGCGCTGGACAAACTGTTGCTGGTCCGACTGAAGATCCTTCTGATGAGCTTACCCAACAAAGCTTGCAAATTGAAGATACAGAGGATGGCAACATGATCATGCAAGACTTAAGCGAGGTACATACTGAGCAATCTCAGTGGGGAGATATAACTAATGATGAAAGCAATTTATCAAATCAAGATGATCGTGTATATAGCAATATTGTTGGTGATATAGATTCGATTGAATCTATTGCTCTGGAAGTAGAACAACAGGAAGAAGTTATTGTTGAAAATGAAAGAAGTGACTGGCATCAAAGTGTGGATGATCATCAGCTCAGTAACGCAACAAATGAATGGCCCCAAAACATATTGGGTAGCGAAGATGGAGAAAATTCTCGTATGCAAGAGCAAGAAGCCCCTGAAGTGTGGCAAGAGGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTAGGCGGACCTTCTGATAATGAAGTAGCTCCAGTTGGTAGAATTCATGGGTTTTATTTTCCCGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAATTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTTCGCAGCAGTTTTCGTGACAGTCTTGACCAATTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCATGTTGAATGGGAGCTGCAGGAAACAACCCCTTCTTCTCCCTTGGCAGAACAAGACTCAGAGCAACAAACTAGGGATCCAGTTGTTGGTCCTCAGGGTACTGTTAACAGCTCACTTGACCGACCCTTGCCACCAACGCCTCCACCTCAGCCTTTATGGGATCGACACTCTCGCCATGACAATTGGTCACAAAGTGACATAAATAATCAGCGCCTAGGAATTGTGCGTTCATTTGCGGGACATAACTGCTTTTCTTTAGCTGATGAGTGGGATATTGTTAATGACTTGAGAATTGACATGGTTAGGCTACAGCAACGAATGAATAATATGCAAAGAATGCTGGAGGCCTGTATGGATATGCAGCTCGAGTTACAACGCTCAATAAGACAAGAAGTCTCTGCAGCCTTAAATCGCTCAACTGGTTCATCAGGAATAGATGACCGTGTTTCACCAGACGATGAATCTAAATGGGAATGTGTGAGGAAAGGACTTTGTTGTATATGCTGTGAAAGCAATATCGATTCTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGTGCGAATGATTTGCACCAAAGTAGAAGAAAGTGTCCAATGTGTCAAGCACCAGTGGTGGAAGTGATCCGAGCTTATTCTATACAATAG | 2559 | 0.4392 | MAVAGVHNVTALESTFLRESLSQSSGRQGDGGRGGTRSSSVLQMWREIEDEQVVRQVQGRPGEVLLQQRSDELVVDPSLENMPDSNQREAHGIEDAGLGENDSETWSQSQNEFHDEHEELNNSSHENSSDLGEVERERVRQIFREWMNSGSRDRSSNNSQGNRGEWLGETEQERVSIIREWVQMSSQQRGISSGENREDQSSETATQIECVRDGFVVNQNEGQTEHTRRGIRKLCGRQVLLDMLKKAQMERQREVQELLDHRVVSHFPHRNRIQALLRGSFLRNDRSIDNSRSTSIAESELGLLRQKQTVSGLREGFFFRKDNFGCSQAASNPSDTSSVGDIDVNTIDQTGASSSQAVPTVHSEQSGPNNNGSDGPEIPCDKMCSQVTPCEILDWQGSAAHVETRDWESSSSIRVERGDGAGQTVAGPTEDPSDELTQQSLQIEDTEDGNMIMQDLSEVHTEQSQWGDITNDESNLSNQDDRVYSNIVGDIDSIESIALEVEQQEEVIVENERSDWHQSVDDHQLSNATNEWPQNILGSEDGENSRMQEQEAPEVWQEDGGFQEAVEIWLGGPSDNEVAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRDSLDQLIQSYVERQGHAHVEWELQETTPSSPLAEQDSEQQTRDPVVGPQGTVNSSLDRPLPPTPPPQPLWDRHSRHDNWSQSDINNQRLGIVRSFAGHNCFSLADEWDIVNDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSGIDDRVSPDDESKWECVRKGLCCICCESNIDSLLYRCGHMCTCSKCANDLHQSRRKCPMCQAPVVEVIRAYSIQ | 852 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst5g00488 | 852 | MobiDBLite | consensus disorder prediction | 19 | 39 | - | - | |
Spst5g00488 | 852 | MobiDBLite | consensus disorder prediction | 147 | 169 | - | - | |
Spst5g00488 | 852 | Coils | Coil | 728 | 755 | - | - | |
Spst5g00488 | 852 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 852 | - | - | |
Spst5g00488 | 852 | ProSiteProfiles | Zinc finger RING-type profile. | 800 | 839 | IPR001841 | - | |
Spst5g00488 | 852 | MobiDBLite | consensus disorder prediction | 186 | 205 | - | - | |
Spst5g00488 | 852 | MobiDBLite | consensus disorder prediction | 644 | 675 | - | - | |
Spst5g00488 | 852 | MobiDBLite | consensus disorder prediction | 96 | 134 | - | - | |
Spst5g00488 | 852 | CDD | mRING-HC-C3HC5_NEU1 | 800 | 849 | - | - | |
Spst5g00488 | 852 | MobiDBLite | consensus disorder prediction | 401 | 435 | - | - | |
Spst5g00488 | 852 | MobiDBLite | consensus disorder prediction | 148 | 166 | - | - | |
Spst5g00488 | 852 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 780 | 850 | IPR013083 | - | |
Spst5g00488 | 852 | SUPERFAMILY | RING/U-box | 799 | 845 | - | - | |
Spst5g00488 | 852 | MobiDBLite | consensus disorder prediction | 644 | 696 | - | - | |
Spst5g00488 | 852 | MobiDBLite | consensus disorder prediction | 109 | 134 | - | - | |
Spst5g00488 | 852 | MobiDBLite | consensus disorder prediction | 351 | 373 | - | - | |
Spst5g00488 | 852 | Pfam | Zinc finger, C3HC4 type (RING finger) | 797 | 844 | - | - | |
Spst5g00488 | 852 | MobiDBLite | consensus disorder prediction | 351 | 380 | - | - | |
Spst5g00488 | 852 | MobiDBLite | consensus disorder prediction | 68 | 87 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst5g00488 | Spst-Chr5 | 3876956 | 3881734 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst5g00488 | 800 | 846 | C3H Transcription Factor Family | AT3G06140 | 38.298 | 4.16e-06 | 48.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst5g00488 | - | - | gmx:100804887 | 1332.39 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst5g00488 | 5 | 3876956 | 3881734 | Spst5g00488 | 5 | 3876956 | 3881734 | ECH | |
Spst5g00488 | 5 | 3876956 | 3881734 | Spst11g01269 | 11 | 37171150 | 37174888 | PCT |