Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00482 ATGGCGGAGGACCGGAGTGATGTGAGTGATTACAGTTCGGAGGACGAAGGAACCGAAGATTACAGGCGTGGAGGCTACCATGCGGTTCGGATTGGTGATACTTTCAAGAATGGATGCTATGTGGTGCAGAGCAAGCTTGGTTGGGGTCATTTTTCCACTGTTTGGCTCGCTTGGGACACTAACAAATCGCGATATGTTGCCTTAAAAATTCAGAAGAGTGCTCAGCATTACACTGAAGCGGCAATGGATGAAATAAAGATTCTCAAACAAATTGCTGACGGGGATCCAGATGACAAAAAATGTGTCGTAAAGCTTTTAGATCACTTTAAGCACTCAGGGCCAAATGGCCAGCATGTTTGTATGGTTTTTGAATTCCTTGGTGATAACCTTCTCACCCTTATCAAGTATAGTGATTACCGAGGGATTTCCCTTCCCATGGTCAAGCAAATTTGTTTCCATATTTTGGTGGGTTTGGATTACTTGCATCGTGAGCTTTCTGTAATACACACTGATTTGAAGCCTGAGAATGTCCTGCTTCTGTCTCCAATAGATCCATCTAAGGATCCTAGAAAATCAGGTGTTCCACTTATCCTTCCAAACACGAAGGATAAGGCTGTGACAAAAAATGGGATAACAATAGCCAATAGGAGTTTGAATGGAGATCTGACCAAGAACCAGAAAAAGAAATTGCGGAAAAAGGCTAAAAAGGCAGCCCAAGGCTGTGTTGGAAGGGAAAATGCTGAGGAAGCTGAGGAGGATTCCAAAGCACCTGATGAGCAAGATGATTGTATTAATGATGTGAAACCAAGTATAGAATCTGGTGTCAATAAACCTAATAGTCCTGTGAGTAAAGATGAATCAGCAAAGACTTCTGAAAATAAGGATATTCCACAAGGAAGTCAAAGTCATAGGAGAGGTAGCCGGTCTACAAGAAAGAAGTTGCTTGCATCTGTCGATCTTAAGTGCAAGCTGGTTGATTTTGGTAATGCTTGTTGGACATATAAACAATTCACAAATGATATTCAAACAAGGCAGTATAGGTGTCCTGAAGTTCTTCTGGGATCTAAATACTCAACTCCGGCAGATCTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGCGATGTTCTTTTTGATCCTCATAGTGGTGACAACTATGATAGGGATGAGGATCATCTAGCATTGATGATGGAGCTTCTTGGGATGATGCCTCGCAAGATTGCTCTTGGTGGGCGCTATTCCCGAGATTTTTTCAATAGATATGGCGATTTGAGACACATCCATCGATTGCGTTTCTGGCCTCTTAATAAGGTGATGATGGAGAAGTATGATTTCAGTGAACAAGATGCAAGTAGCATGGCTGACTTCCTTCTTCCATTACTTGATTTTGTCCCTGAAAAGAGGCCAAATGCTGCACAATGCCTTCAGCAGCCATGGTTCTGTGCAGGTCCCCGGACTCTTGAGCCCTCAGTGGCTACTGTGCAGCATGCTGCAATTGAGGGGGAAATATCTGAGAAGATGCAGAGGGAAAAAGCTGAGCAGGAGGCTGTGGAAGTTGGTATGGAGAATATGGCCATAGATGGAAATCCAAAACAACTCTAA 1608 0.4328 MAEDRSDVSDYSSEDEGTEDYRRGGYHAVRIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTNKSRYVALKIQKSAQHYTEAAMDEIKILKQIADGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGISLPMVKQICFHILVGLDYLHRELSVIHTDLKPENVLLLSPIDPSKDPRKSGVPLILPNTKDKAVTKNGITIANRSLNGDLTKNQKKKLRKKAKKAAQGCVGRENAEEAEEDSKAPDEQDDCINDVKPSIESGVNKPNSPVSKDESAKTSENKDIPQGSQSHRRGSRSTRKKLLASVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIHRLRFWPLNKVMMEKYDFSEQDASSMADFLLPLLDFVPEKRPNAAQCLQQPWFCAGPRTLEPSVATVQHAAIEGEISEKMQREKAEQEAVEVGMENMAIDGNPKQL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00482 535 ProSiteProfiles Protein kinase domain profile. 40 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00482 535 SUPERFAMILY Protein kinase-like (PK-like) 35 492 IPR011009 -
Spst5g00482 535 CDD STKc_SRPK 29 482 - -
Spst5g00482 535 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Spst5g00482 535 MobiDBLite consensus disorder prediction 223 310 - -
Spst5g00482 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Spst5g00482 535 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Spst5g00482 535 Gene3D Transferase(Phosphotransferase) domain 1 123 482 - -
Spst5g00482 535 FunFam Serine/threonine-protein kinase SRPK-like protein 312 482 - -
Spst5g00482 535 MobiDBLite consensus disorder prediction 272 286 - -
Spst5g00482 535 FunFam CMGC/SRPK protein kinase 26 125 - -
Spst5g00482 535 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 9 506 - -
Spst5g00482 535 Pfam Protein kinase domain 40 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00482 535 Pfam Protein kinase domain 317 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00482 535 SMART serkin_6 40 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00482 Spst-Chr5 3823328 3826752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00482 6 534 EF-hand Containing Proteins AT5G22840 68.480 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Spst5g00482 Pkinase 1.5e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00482 K08832 - gmx:100791829 989.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00482 5 3823328 3826752 Spst5g00482 5 3823328 3826752 ECH
Spst5g00482 5 3823328 3826752 Spst11g01253 11 36976180 36979930 PCT