Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00473 ATGGAGCCTCCCGTGGTGAGATCCAGGGGTCGCCCGCGCAAACGGAGAAGAGAAGAGGACGGAAACGTGGCCGGCGATCCAAGAACGCTTCCCGAGGCGAAAAAGGAGCCTCCGGTTGCACTGGTTGGTCGATACGTGCTGAAAGAGTTCCGCAGGAACACCGTTCTTCTCGGAAAAGTAGCGCGCTACGAGCGCGGATTGTACAGAGTCGTGTACGAGAGTGGCGGATTTGAGGATTTAGATAGCAGCGTGATTCGTAGGATACTTCTCCTTGATAGCTATTTCGATGATGATTTGATTCGGAGGAAGGGCGAATTGGAGGAAGTGATGTTGCCGAAGATCGCGGAGGAACCAGAGAGAGGTTCGAGCGAATTGCTCGGCGATTTATCGGTTGAGAACGGAGAGGAACGAGATGAAACGGACGATGAGTCGGGCGGTGAGGCTATGGATTTGGGTTCCGATGCCGAAACGCCGACACCTTTTCCGCCAACGCTGCCACCGTCTTCCGGAACAATTGGCATTCCGGAATCGTGCGTTTTGAATCTCCTTTCAGTTTACGGATTTTTGCGTTCGTTTAGCATTTGCCTGTTTTTAAGTCCGTTTACTTTGGATGAGTTTGTCGGTGCTTTGAACTGTAAAGTTTCCAACACGTTGCTTGATGCTATTCACGTTTCGTTGATGCGTGTTTTGAGACGTCACCTTGAAAACATTTCACCAGATGGTTCGCGGCGTGCAACAAAATGCCTCCGGTGCATTGATTGGAGTTTGCTTGATGCTTTGACTTGGCCTGTTTTTGTGTATCAGTACTTAGCCATTTATGGATACACAAAGGGACCTGAGTGGAAAGGATTTTATGACGAAATCTTTTATGGCGAGTACTATTTATTGCCTGCAAGTAGGAAATTGGTGATTTTGCAAATTCTCTGTGATGATGTTTTGGCATCTGAGGAGTTAAAAGCTGAAATGAACATGCGTGAAGAATCAGAGGTTGGGATTGATTATGATAATGAAGATAACCTTCCTGCTGAAATTGTGCCAAGAAGAGTTCATCCAAGATATTCAAAAACTACTGCCTGCAAGGATACTGAAACTAAGAAGTATGTTTCAGAATTGAATGCTGATGATGTTGATGGAAATGGAGATGAATGTCGCCTATGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGTTGTCCTGCTGTTTATCATTCGAGGTGTATTGGTGTGATGAAGATGCATATACCAGATGGGGAATGGTATTGTCCAGAATGCAAAATAAATATGATTGGGCCTACAATTGCACGGGGAACATCACTTAAAGGGGCTGAAGTATTTGGAAAGGATTTGTACGGGCAAGTTTTCATGGGTACTTGCGACCACTTACTGGTGGTCAATGTCAACAGTGATGAATTTTGTCTTAAATACTACAATCAGAATGACATTCCTAAAGTTCTCCTAGTCCTTTATGCATCTGAGCAACTTAGACTTGTGTACAATGGTATTTGCATGGCGATGTTAAGATATTGGAATATTCCAGAAAACTTGTTGCCACTTGGTGTCACAAGTGTACCACAAGTAAACTTAATAAATACAAACACAGATGTGAAACTTCTTCCCATGATTGATGAAGAGCAACAACAAGCCGTAAGATCAGTGAAGGCAGAATACAGTTTAACATTTGGAAATGGAATTTGTAGTGATAATTTGGTGCCATCTTTTGATGCTTCTTTGGTTACAACCTGTAGTCCTGCTCCTAGAAGCTGTGACAATAAGAGAACTACTGTGAATTTGAAACTTCATGAGGAAACTGCAATGAATCCAATGGTTTCAACTATTAACCATCAGTCACATCCAAAGTGCGAAAATCCTGTTAACAAGTCAGCTGCAGTAGGCCCTTCTAAGTGCTCTTCAGTAAGCAACCAAGTTAATAATTATGGGCACACAAATGATAGGTTGCCTATGAATTTGTCTTTGCATACTAAAGGTGACCAATCTGGTTTTGGAAAGTGCAAAGCCAGTTTAACTAATGATTTTGTGTACTTTGGTTGCTCCTATAAACCACAGTCATACATTAATTGCTATATGCATGGTGATTTTGCGGCATCTGCTGCTGCTAATTTGGCCATTCTTTCTTCAGAGGATTCTAGATCAGAGGGTCATGTATCTGACACCTTGGGGAAAGCAACATCTGGAAACACTTATTTACTAGCAAAAGCATTCTCCCTAACAGCTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTGTAGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCCTTGTTTCAAGCAAGAAAGGATGCATGTTAAATCATGCTGCTCTAAGTGCCACAAAAAATGCAATGAAAATCCTTTCTGGTCTTGCTCCTGTAAGGATTGGAGAAGGAATCATCCCTAGCATTGCAACTTATGTTATATATATGGAGGAAAGTTTACGTGGTTTAATAGTTGGGCCCTTTTTAAGTGAATGTTATAGAAGGCATTGGCGAAAACAAGTAGAACGAGCCACATCATTTAGTCATATAAAACCCCTTTTACTCAAACTTGAGGAGAACATTCGAACAATTGCTTTTTGTGGGGACTGGGTGAAGTTGATGGATGATTGGTTGGCTGAATTTTCTACAATTCAAAGTGCTGCAAGTACTCTTGGAACTACACAGAAAAGAGCAACATGTGGGAGGCGTAAGAAACAGTCATCAATCAATAAAGTTACAGCTGGTGGTTGTCCTGAAAATTTTGCTTGGTGGCATGGTGGGAAGTTTTCCAAATCTGTATTTCAGAAAGCTGTTTTGCCAAAATCCATGGCAAGAAAAGCAGCCCGACAAGGTGGTTCGAGGAAAATTTCGGGTATATTATATGCTGATGGCTCTGAGATTCCTAAAAGAAGCAGACAGCTAGTTTGGAGAGCTGCAGTCCAAATGAGTGGGAATGCATCTCAGTTGGCCCTTCAGGTCCGGTATCTGGATTTTCATGTCAGATGGAGTGATCTGATTCGACCAGAGCATAACCTTCTGGATGTGAAAGGTCAAGACACTGAAGCGTCTGCTTTTAGGAATGCAAATATTCATGGAAAAAAAATTGCGGAGGGCAAAATTTTCTATAGAGTAGCCTTTGGAAGCCAAAAACATCTTCCTTCTCGGGTAATGAAAAATGTTGAAATAGAGCAAGGACCTGAAGGAAAGGAAAAATATTGGTTTTCTGAAAAACGCATTCCTTTATATTTGGTAAAAGAGTATGAATTACGCAATGGACAAATGCAATCTAATAATGAGTACCTGCACATTACATCTCAGTTGCACAAAAGGCGGAATGCTCTCAAGTGCAGGGCCTGTCAAGGTTATTGTCACTCGGGCTGTTCTGTAAGTTCAACTGTCTCTACATGTGAAGAAGTTGAGTTCTTGGCCACATGCAAACAATGTCATCATGCCAAATTACTTACTCAAAAAGAGTCTTGTAATGAGTCTCCTACTAGTCCCTTGCTCTTAGAAGGACAAGAAAACAGCACTTCAGCAGTTCTGAAGGGACCAAGGCCTAAATATGATGATCAAGGATTGGTGTCTTCTAGGATGAAAAACAGTCGATCTGACATGAAACAAGTTGCTTATGATTTCCCTTTCAAAACAAAAGGCCGTAGCAAAAGTTGTTCTTGGGGTGTTATTTGGAAAAAGAAGAGTAACGAAGATACAGGCTTTGATTTCAGGCTCAAGAACATTCTTCTAAAAGGAGGTTCAAGCCTGCCTCAATTGGAGCCTGTTTGTCGGTTGTGCAATAAAACATATAGGTCTGATCTAATGTATATCTGCTGTGAAACATGCAAACATTGGTATCATGCTGAAGCTGTTGAACTTGAAGAGTCCAAACTTTTTGATGTGCTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAGTCACCTGTGTGTCCTTTCTCCGATTTGTATTGCAAGATTCAAGAGGGAAGGAAGTCTTCAAGGGCTTCAAAGAAAGAGTACGTCTGGGGAGATTCTGATTCTGGTACACCTGTTTACACAAGAACAAATGAATCTGCAACTCCTATCTATCCTACAGTGGATGTCTCTAGACAGGACAATGATCCTCTGCTGTTCTCCCTTTCAAGTGTTGAGCTGATTTCAGAACCCAATTTAGTTGCAAATGTTGCAGGTAATACTGTCTCTGGGCCAGGACTTCGGAGATTACCTAAACGTGAGAGGGAGAATAATGATGATTATTATAGAGGTAATCTACATGCTCAATTTTCAACCAGCAATGAAATGGTGTCCAAATCTGTAAAAGATTTATCACCTGTAGAATATGGCACTGCTGACTGCACTCTTCTGAAGGACCCTGAAACTGTAAATTATGATGAATTCGTTGATTTTGAACCTCATACCTTCTTCTCGCTGACTGAACTGCTCCACTCAGATGAAAATAATAGTCAATTTGAGGAAGCCAATGGATCTGGGTTCTTCTCGGGGTATTTGAAAAAATCTTGTACATTAGGTGTTCCTGATGAATGCGGGACTGTCAGTTTAGCTTCCAACTGCGAACCTACAAATTTGTTACAAGTAAACATTAACAGTTGTAGGCAATGTTCACAAAAGGAACCAGCCCCTGATCTCCATTGTGAGATTTGTAGAATTTGGATTCACAGCCAATGTTCACCTTGGGTTGAATCACCATCTCAGCATGCAAGTTGGAGATGTGGTGATTGCCGGGAATGGCGATAG 4761 0.4194 MEPPVVRSRGRPRKRRREEDGNVAGDPRTLPEAKKEPPVALVGRYVLKEFRRNTVLLGKVARYERGLYRVVYESGGFEDLDSSVIRRILLLDSYFDDDLIRRKGELEEVMLPKIAEEPERGSSELLGDLSVENGEERDETDDESGGEAMDLGSDAETPTPFPPTLPPSSGTIGIPESCVLNLLSVYGFLRSFSICLFLSPFTLDEFVGALNCKVSNTLLDAIHVSLMRVLRRHLENISPDGSRRATKCLRCIDWSLLDALTWPVFVYQYLAIYGYTKGPEWKGFYDEIFYGEYYLLPASRKLVILQILCDDVLASEELKAEMNMREESEVGIDYDNEDNLPAEIVPRRVHPRYSKTTACKDTETKKYVSELNADDVDGNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMHIPDGEWYCPECKINMIGPTIARGTSLKGAEVFGKDLYGQVFMGTCDHLLVVNVNSDEFCLKYYNQNDIPKVLLVLYASEQLRLVYNGICMAMLRYWNIPENLLPLGVTSVPQVNLINTNTDVKLLPMIDEEQQQAVRSVKAEYSLTFGNGICSDNLVPSFDASLVTTCSPAPRSCDNKRTTVNLKLHEETAMNPMVSTINHQSHPKCENPVNKSAAVGPSKCSSVSNQVNNYGHTNDRLPMNLSLHTKGDQSGFGKCKASLTNDFVYFGCSYKPQSYINCYMHGDFAASAAANLAILSSEDSRSEGHVSDTLGKATSGNTYLLAKAFSLTASRFFWPSSEKKLVEVPRERCGWCLSCKALVSSKKGCMLNHAALSATKNAMKILSGLAPVRIGEGIIPSIATYVIYMEESLRGLIVGPFLSECYRRHWRKQVERATSFSHIKPLLLKLEENIRTIAFCGDWVKLMDDWLAEFSTIQSAASTLGTTQKRATCGRRKKQSSINKVTAGGCPENFAWWHGGKFSKSVFQKAVLPKSMARKAARQGGSRKISGILYADGSEIPKRSRQLVWRAAVQMSGNASQLALQVRYLDFHVRWSDLIRPEHNLLDVKGQDTEASAFRNANIHGKKIAEGKIFYRVAFGSQKHLPSRVMKNVEIEQGPEGKEKYWFSEKRIPLYLVKEYELRNGQMQSNNEYLHITSQLHKRRNALKCRACQGYCHSGCSVSSTVSTCEEVEFLATCKQCHHAKLLTQKESCNESPTSPLLLEGQENSTSAVLKGPRPKYDDQGLVSSRMKNSRSDMKQVAYDFPFKTKGRSKSCSWGVIWKKKSNEDTGFDFRLKNILLKGGSSLPQLEPVCRLCNKTYRSDLMYICCETCKHWYHAEAVELEESKLFDVLGFKCCKCRRIKSPVCPFSDLYCKIQEGRKSSRASKKEYVWGDSDSGTPVYTRTNESATPIYPTVDVSRQDNDPLLFSLSSVELISEPNLVANVAGNTVSGPGLRRLPKRERENNDDYYRGNLHAQFSTSNEMVSKSVKDLSPVEYGTADCTLLKDPETVNYDEFVDFEPHTFFSLTELLHSDENNSQFEEANGSGFFSGYLKKSCTLGVPDECGTVSLASNCEPTNLLQVNINSCRQCSQKEPAPDLHCEICRIWIHSQCSPWVESPSQHASWRCGDCREWR 1586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00473 1586 PANTHER PHD FINGER FAMILY PROTEIN 131 1550 - -
Spst5g00473 1586 ProSiteProfiles Zinc finger PHD-type profile. 380 427 IPR019787 -
Spst5g00473 1586 CDD PHD2_CHD_II 383 424 - -
Spst5g00473 1586 CDD PHD_TCF19_like 1264 1311 - -
Spst5g00473 1586 ProSitePatterns Zinc finger PHD-type signature. 383 424 IPR019786 -
Spst5g00473 1586 SMART testlast3 176 236 IPR018501 -
Spst5g00473 1586 SUPERFAMILY FYVE/PHD zinc finger 375 431 IPR011011 -
Spst5g00473 1586 MobiDBLite consensus disorder prediction 13 33 - -
Spst5g00473 1586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1259 1318 IPR013083 -
Spst5g00473 1586 MobiDBLite consensus disorder prediction 134 149 - -
Spst5g00473 1586 MobiDBLite consensus disorder prediction 120 168 - -
Spst5g00473 1586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 429 IPR013083 -
Spst5g00473 1586 CDD PHD_SF 1538 1582 - -
Spst5g00473 1586 ProSiteProfiles DDT domain profile. 176 236 IPR018501 -
Spst5g00473 1586 SMART PHD_3 382 425 IPR001965 -
Spst5g00473 1586 SMART PHD_3 1538 1583 IPR001965 -
Spst5g00473 1586 SMART PHD_3 1264 1312 IPR001965 -
Spst5g00473 1586 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 291 323 IPR028942 -
Spst5g00473 1586 SUPERFAMILY FYVE/PHD zinc finger 1261 1317 IPR011011 -
Spst5g00473 1586 MobiDBLite consensus disorder prediction 1 35 - -
Spst5g00473 1586 Pfam DDT domain 178 233 IPR018501 -
Spst5g00473 1586 Pfam PHD-finger 383 425 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00473 Spst-Chr5 3758542 3765411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00473 266 516 EF-hand Containing Proteins AT5G22760 48.188 1.35e-72 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Spst5g00473 DDT 8.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00473 - - gmx:100808614 2613.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00473 5 3758542 3765411 Spst5g00473 5 3758542 3765411 ECH
Spst5g00473 5 3758542 3765411 Spst11g01245 11 36905933 36914683 PCT