Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00471 ATGGGGAGTAAGGTCAGCGACCACCACTTGTCCACAATCCGATCCATTGTCGGTTCCGAATTCTCAGACATGGAAATCATCAGAGCCCTCCATATGGCCAAAAACGACATCACTGGGGCCATCAACATCATTTTCGACGCTCACACCGTCCCAAGATTCAATCCCACGCCCCCCAACAATGCACGTTCAGTTTCGCCTCTAAAACCCTCTCCTCCTACTCCAATTGTCACCAAGCCTAGCTTCAGTGAACCACCAAGTGATGATAACAGCGATTATTGGTGGTTAGTGAGTTGCGGCGAAGTAACTGGTTTATCCACATGTAAAGGGAGAATTATAAGTTCCGGCGAGAGGGTGATTTTCAAGTTTCCAACGAAGAAACTCTCCTCTTCGCCCTCTCCGGGGAGGGGTTTTGGACGGGCTGCGAAGTGTTCGGAGATAGTTCGGTTCTCCACTGAACAAGCTGGGGAGGTTGTGTGGGTCTTGATTGGGAGAATACCGAACGAATGGGCTCGGTGTCTTTTGCCTCTGGTGCGGGATCATAAGGTTAGGATTGAGGGGCAGTGTAAATTGGCTCCTCAAGTTTTGGGCATTATGGACTCTATTATTTTGTCAGTGAGTGTATTTATCAATAGTTCAATGTTTGGTAAGCATCACCAGGTTTCTCTCAAGGATGCTGCCAACTCGACTGATGAATCAGTTTTTCATCCGCTACCAACCCTGTTTCGGTTGCTGGGTTTAAATCCTTTTAAAAAGCTTTTGTTGTTGGATAAGGCAGAGTTAACTCCAGGTGATTTCTACTCCAACAAGCGTCCTCTCAGTGAAAGGGTAACATTATTACATGCCAAGTGTGAGCATCCTTCTCAAAATGGTCATGAGAATGACAATGAAGATTCTATTTCTGAGATTGATGTTGAGAACATTGTTGGTGTTGAATCAAGTGCAGAATTAGAGGAAATGGACCCTCCTGTTAATCTTCTGTGTGATCTGCGGCCCTATCAAAAGCAGGCACTTTACTGGATGATCCAGATGGAGAAGGGACAATGTATGGATGAGACAGCAACAACCCTCCATCCATGTTGGGAGGCATATCGTCTGGTTGACAAGAGGGAGCTTGTTATTTACTTGAATGCATTTTCTGGTGAAGCCACAACTGAATTTCCCAGCACCCTTCAAATGGCTAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCCCTTCTCGTTGCCCATTCAGGAAAGGGTGAATCAATAGGTAGTCAACCCATAACCAAGTCCTTTACTGAAGGTGTTGAAGGTAGCGATACAATGACCAATTTTTCCAACATACCTAAAAAGGCAACCAAATTGTCTGGTTTTGATAAAACGACAAAGCAAAAAAATTCTCTAACAAGTGGTGGCAACTTGATAATATGTCCCATGACTCTACTTGGGCAATGGAAGGCAGAGATTGAAACTCATGTGCACCCTGGGTCTCTGTCTCTTTATGTCCACTATGGACAATGTAGGCCAAAAGATGCAAAAAGTCTCGTTCAAAGTGATGTTGTAATTACTACATATGGAATTTTGGCCTCTGAATTTTCCAGTGAGGTAGTTGAAACCAGTATACTATCTCTGAATGCAGATGATAACAGTGGACTCTTCTCAATTCGGTGGTTTAGAGTGGTTCTTGATGAAGCACATACCATAAAATCTTCGAAAAGCCAAGTTTCTGTTGCAACTGCTGCCCTAATTGCTGACAGACGTTGGTGTCTAACAGGCACTCCAATTCAGAACAGCCTTGAAGATATTTACAGTCTTCTGCGGTTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTAATTCAGAAACCATTTGAGGGTGGTGATGAAAGAGGGCTCAAGTTAGTTCAATCAATTTTAAAGCCAATCATGTTGAGGAGAACCAAATATAGCACAGATCGAGAGGGAAAGCCCATTCTTGTTCTGCCTCCGGCTGATATGCAGGTAATTTACTGTGAACAAACAGAAGCTGAAAAGGACTTCTACGAAGCTCTATTCAAAAGATCTAAGGTAAAATTTGACCAGTTCGTTGAGCAAGGACGAGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGCCTTCGGCAGTGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGAATTTGGGGATCTAAACAAACTAGCTAAGCGCTTCCTTAGAGGAACATATAATGCTTTAGATGGCGAAGTAAAAGATGCACCTTCACGGGCTTATGTTGAAGAAGTTGTGGAAGAGCTACGGAAAGGGGAGCAAGGAGAGTGTCCAATATGCCTTGAAGCATTTGAAGATGCAGTGTTGACACCGTGTGCTCATCGCATGTGCCGGGAATGCCTCTTGGCAAGTTTGAGAAATGCTACTTCTGGCTTATGTCCTGTTTGTAGGAAAGCAGTCAGCAGGCAGGATCTTATCACAGCCCCTACTGAGAATCGGTTTCAGGTGGATATTGAGAAGAACTGGGTAGAGTCGTGCAAGGTAACTTTTCTTTTGGATGAACTTAAAAATCTCCGCTCAGCAGGCACCAAAAGCATTGTTTTCAGCCAGTGGACTGCTTTCCTGGATCTATTGCAGATCCCCTTCACTCGGAATAACATTTCATTTGTTCGTCTTGATGGGACTCTGAATCTTCAGCAGCGGGAGAAAGTAATCAAGCAATTTTCAGAAGACAGCTCCACTCTGGTGTTGTTAATGTCACTAAAAGCTGGTGGAGTGGGTATAAATCTAACTGCAGCTTCTAATGCCTTTGTCATGGTATGTGCAAATGACCCATGGTGGAATCCGGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGCATTGGACAAACAAAGAAGGTGGCCATTAAACGTTTTATTGTAAAGGGGACCGTTGAGGAGAGAATGGAAGCAGTACAAGCACGTAAACAACGAATGATTTCTGGTGCCTTGACTGATCAAGAAGTTCGTAGTGCACGAATTGAGGAGAAAAACAGACACATTACAGTTCGCATTGTCACAGTATCATCAGTTTCTTTATGCAATCGCAATATGGCCGAGGGATGTCAATCCCAGGACAAACACCCTGCATCGGATGCAGAGCAAAGAGTGAAGAAGAGGGGTAGGCCTCCATTGCTGCTTTCATATTCTTCTGTCAAGAGCAGAGGCCGAGGACGTCCTCCTAGTTTTACCGGACCTTTACCAACACAAGTTTCTAACGTTGATTTGTGTTATCGTCTTGTGGATGAGCAGTTAAAAGGGTCTTGCAAGAATTGCATGCAGATTAATAGTCTGCATTTGATAGAATACTACAAAGGAGGTGATCCATTTGATAAAGACTTGGCAGCAAAGGTATTAAAATTTGCTAAAACATGCTGTCAAACTGTTTGCGTACTTTCTGCTGTGGGTACCTTATCAAGCGTTGTCCTTCGCAAGCCCGGTAATCCAAGCACTCATACTGTGAAATGGGAGGGGCGCTTTGATATTTTGTCACTGTCTGGAACATATACCTTCATCCCTGGTCAGGATGATGCAAATGACGTACATAACTGGTTGAACATTTCACTAGCTAAGTGTAATGGAAGTGTTTTTGGAGGTTCCGTTGTGGGTCCAATGATTGTGGCTGCCCCTGTTAGTCTAATTCTTGCAAGTTTCAAGCTAAAGAGTATGGAAAATATTAGAAGGCTCACAGCTCAGTCTACTGCTGCTGTTGCTTCTTCTGCTGCTGCTCCTGTTGCTTTTTCTTCCGCTGCTGCTCCTGTTGTTTTTTCTTCCGCTGCTGCTGCTATTGCTTCTTCTTCTGCTGCTGCTACTTCTTCTTCTTCTGCTGCTGCTTCATCTTCAGCTGCTGCTGCAGATTTGTCCAGTCATAAGGACGCAGATACAGAAGCGGATTCCGATGAATATCTATTGCTAGATAGCAAAAAGAGTTGTGGTTCTCCAACATCTGAACTTTTAGCAGAAACTGATAAACCATCAGAAGAGTGTGTCACTCTTAAAACAACTGATAAACCATCAGAGAGTGACACTTCTACCATGAGAGAGCACACAGCTGGGTCTTCTCCTGTTGCAGATTATTCCACTTGTTTGGATATAGATTTAGAAAAGGTTGCCTATGCAAATCCATGTGAAGAAGGAGGCAAACAGAGTGGCTGTTCACCAACATCTGGACTTTTACCAACAACTGATGAAGCACCAGAGAATGTCACTCCTAAAACAACTGATAACCCACAGAACAAAGTAAGTTCTGAAACAACTGATAAATCCCCAGAGAATGACACTTTTGCATCAACTAGTAAATCACCAGGGAATGTCGTTGCATCAACACCTGATACATTTCCCGTGATGGTCTGCCCCATCAGCCAAACATCACCCGATATTCCTGAGAGTCCTCAGATATAA 4467 0.4372 MGSKVSDHHLSTIRSIVGSEFSDMEIIRALHMAKNDITGAINIIFDAHTVPRFNPTPPNNARSVSPLKPSPPTPIVTKPSFSEPPSDDNSDYWWLVSCGEVTGLSTCKGRIISSGERVIFKFPTKKLSSSPSPGRGFGRAAKCSEIVRFSTEQAGEVVWVLIGRIPNEWARCLLPLVRDHKVRIEGQCKLAPQVLGIMDSIILSVSVFINSSMFGKHHQVSLKDAANSTDESVFHPLPTLFRLLGLNPFKKLLLLDKAELTPGDFYSNKRPLSERVTLLHAKCEHPSQNGHENDNEDSISEIDVENIVGVESSAELEEMDPPVNLLCDLRPYQKQALYWMIQMEKGQCMDETATTLHPCWEAYRLVDKRELVIYLNAFSGEATTEFPSTLQMARGGILADAMGLGKTIMTISLLVAHSGKGESIGSQPITKSFTEGVEGSDTMTNFSNIPKKATKLSGFDKTTKQKNSLTSGGNLIICPMTLLGQWKAEIETHVHPGSLSLYVHYGQCRPKDAKSLVQSDVVITTYGILASEFSSEVVETSILSLNADDNSGLFSIRWFRVVLDEAHTIKSSKSQVSVATAALIADRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKYSTDREGKPILVLPPADMQVIYCEQTEAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFGDLNKLAKRFLRGTYNALDGEVKDAPSRAYVEEVVEELRKGEQGECPICLEAFEDAVLTPCAHRMCRECLLASLRNATSGLCPVCRKAVSRQDLITAPTENRFQVDIEKNWVESCKVTFLLDELKNLRSAGTKSIVFSQWTAFLDLLQIPFTRNNISFVRLDGTLNLQQREKVIKQFSEDSSTLVLLMSLKAGGVGINLTAASNAFVMVCANDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRSARIEEKNRHITVRIVTVSSVSLCNRNMAEGCQSQDKHPASDAEQRVKKRGRPPLLLSYSSVKSRGRGRPPSFTGPLPTQVSNVDLCYRLVDEQLKGSCKNCMQINSLHLIEYYKGGDPFDKDLAAKVLKFAKTCCQTVCVLSAVGTLSSVVLRKPGNPSTHTVKWEGRFDILSLSGTYTFIPGQDDANDVHNWLNISLAKCNGSVFGGSVVGPMIVAAPVSLILASFKLKSMENIRRLTAQSTAAVASSAAAPVAFSSAAAPVVFSSAAAAIASSSAAATSSSSAAASSSAAAADLSSHKDADTEADSDEYLLLDSKKSCGSPTSELLAETDKPSEECVTLKTTDKPSESDTSTMREHTAGSSPVADYSTCLDIDLEKVAYANPCEEGGKQSGCSPTSGLLPTTDEAPENVTPKTTDNPQNKVSSETTDKSPENDTFASTSKSPGNVVASTPDTFPVMVCPISQTSPDIPESPQI 1488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00471 1488 MobiDBLite consensus disorder prediction 1343 1366 - -
Spst5g00471 1488 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 88 1015 - -
Spst5g00471 1488 MobiDBLite consensus disorder prediction 55 87 - -
Spst5g00471 1488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 663 1011 IPR027417 -
Spst5g00471 1488 Pfam Zinc finger, C3HC4 type (RING finger) 782 829 - -
Spst5g00471 1488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 752 849 IPR013083 -
Spst5g00471 1488 ProSitePatterns Zinc finger RING-type signature. 800 809 IPR017907 -
Spst5g00471 1488 SMART helicmild6 884 971 IPR001650 -
Spst5g00471 1488 SMART ring_2 785 824 IPR001841 -
Spst5g00471 1488 Gene3D - 1132 1258 - -
Spst5g00471 1488 Gene3D - 386 663 IPR038718 -
Spst5g00471 1488 ProSiteProfiles Zinc finger RING-type profile. 785 825 IPR001841 -
Spst5g00471 1488 SMART ultradead3 325 635 IPR014001 -
Spst5g00471 1488 CDD DUF296 1135 1240 IPR005175 -
Spst5g00471 1488 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 387 613 IPR014001 -
Spst5g00471 1488 MobiDBLite consensus disorder prediction 1398 1465 - -
Spst5g00471 1488 CDD SF2_C_SNF 851 982 - -
Spst5g00471 1488 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 855 1019 IPR001650 -
Spst5g00471 1488 SUPERFAMILY RING/U-box 773 831 - -
Spst5g00471 1488 CDD DEXDc_SHPRH-like 329 651 - -
Spst5g00471 1488 Gene3D - 667 1061 IPR027417 -
Spst5g00471 1488 MobiDBLite consensus disorder prediction 62 79 - -
Spst5g00471 1488 Pfam SNF2-related domain 332 729 IPR000330 GO:0005524|GO:0140658
Spst5g00471 1488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 651 IPR027417 -
Spst5g00471 1488 SMART HIRAN_2 96 209 IPR014905 GO:0003676|GO:0008270|GO:0016818
Spst5g00471 1488 Pfam HIRAN domain 100 205 IPR014905 GO:0003676|GO:0008270|GO:0016818
Spst5g00471 1488 ProSiteProfiles PPC domain profile profile. 1115 1263 IPR005175 -
Spst5g00471 1488 MobiDBLite consensus disorder prediction 1403 1463 - -
Spst5g00471 1488 Pfam Helicase conserved C-terminal domain 855 971 IPR001650 -
Spst5g00471 1488 MobiDBLite consensus disorder prediction 1333 1379 - -
Spst5g00471 1488 Pfam Plants and Prokaryotes Conserved (PCC) domain 1133 1241 IPR005175 -
Spst5g00471 1488 SUPERFAMILY AF0104/ALDC/Ptd012-like 1133 1241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00471 Spst-Chr5 3727025 3752714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00471 1 1018 RAD5 or RAD16-like Gene Family AT5G22750 68.255 0.0 1430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst5g00471 SNF2_N 1.8e-83 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00471 K15505 - gmx:100794558 1743.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00471 5 3727025 3752714 Spst5g00471 5 3727025 3752714 ECH