Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00461 ATGGCTCCTAAAGAGCAATTGTTTAATGCAGCTGATAGTACAAAGAAGGCCGATCCTAAGGCACAAGCCTTGAAAACTGCTAAGGCAGTTAAGTCAGGTGCTACCTTTAAGAAGAAGGCCAAAAAGATCCGAACTTCTGTTACCTTTCATCGGCCAAAGACTTTGAAAAAGGATAGGAACCCCAAATACCCGCGCATTAGTGCTCCTCCCAGGAATAAGCTTGATCACTATCAGATACTGAAATATCCTCTCACAACTGAGTCCGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTCGACCTGCGGGCTGACAAGAAGAAGATCAAGGATGCAGTGAAGAAGATGTATGATATTCAGGCCAAGAAAGTTAACACCTTGATCAGGCCTGATGGTACCAAGAAGGCTTATGTCAGGTTGACACCTGATTATGATGCCCTGGATGTGGCCAACAAGATTGGAATTATATAA 480 0.4292 MAPKEQLFNAADSTKKADPKAQALKTAKAVKSGATFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00461 159 NCBIfam 50S ribosomal protein L23 83 159 IPR019985 GO:0003735|GO:0005840|GO:0006412
Spst5g00461 159 FunFam 60S ribosomal protein L23a 39 159 - -
Spst5g00461 159 Hamap 50S ribosomal protein L23 [rplW]. 79 159 IPR013025 GO:0003735|GO:0005840|GO:0006412
Spst5g00461 159 ProSitePatterns Ribosomal protein L23 signature. 137 152 IPR001014 GO:0019843
Spst5g00461 159 MobiDBLite consensus disorder prediction 1 22 - -
Spst5g00461 159 PANTHER 60S RIBOSOMAL PROTEIN L23A 12 159 IPR013025 GO:0003735|GO:0005840|GO:0006412
Spst5g00461 159 Pfam Ribosomal protein L23 79 141 IPR013025 GO:0003735|GO:0005840|GO:0006412
Spst5g00461 159 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 76 152 IPR012678 GO:0003735|GO:0005840|GO:0006412
Spst5g00461 159 Pfam Ribosomal protein L23, N-terminal domain 20 69 IPR005633 -
Spst5g00461 159 Gene3D - 40 159 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00461 Spst-Chr5 3639704 3640815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00461 32 159 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 90.625 3.02e-68 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00461 K02893 - gmx:100785534 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00461 5 3639704 3640815 Spst2g02274 2 21895276 21896488 PCT