Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00457 ATGGTTCAACAGGAAGTGCGTAAAGGACCATGGACAGAACAGGAAGACTTCAAATTGGTGTCCTTTGTTGGCTTGTTTGGAGACCGTAGATGGGACTTTATTGCTAAGGTATCAGGTTTGAATAGAACAGGTAAAAGTTGCAGATTACGGTGGGTTAATTACCTTCATCCTGGTCTCAAACGAGGAAAGATGACACCCCAGGAAGAACGCCTTGTGCTGGAGCTTCACTCAAAATGGGGAAATAGGTGGTCAAGAATTGCTCGCAAGTTACCAGGGCGCACTGACAACGAGATTAAGAATTACTGGAGGACTCTGATGAGGAAAAAGGCTCAGGACAAGAGAAGAGTAGAAACTGCATCATCATCATCATCATCAACACCAGTACCATCTTCTAGTGTTCATTCCTCGATATCAATATCCTCAAAGAAGCATGCAGTGGATCCGCATGCTTCAAAGAAGGCAGGAGAAGAGAGCTTTTATGACACAGGAGGTCCTACTGCGATAGGGTCAACCCAAGATGAAGGTCAGGGTGGGTTCTCCATGGACGACATATGGAAAGATATTGACATGTCAGAAGAGATCAACAGTTTTCTTCATGGACACAGTGAAGAAGGTTGCAACTTCTCTTGCCCACAAGTGCTTTCTCCATCTCCATCATCATGGGAGTATTCTTCTTGTGACCCTCTGTGGGTGATGCTGGATGAGGAAAGTTTGTTTTGCCCCATGAGTGAACCATATTTTTATGCATTAAACGTCTAA 759 0.444 MVQQEVRKGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHSKWGNRWSRIARKLPGRTDNEIKNYWRTLMRKKAQDKRRVETASSSSSSTPVPSSSVHSSISISSKKHAVDPHASKKAGEESFYDTGGPTAIGSTQDEGQGGFSMDDIWKDIDMSEEINSFLHGHSEEGCNFSCPQVLSPSPSSWEYSSCDPLWVMLDEESLFCPMSEPYFYALNV 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00457 252 FunFam MYB transcription factor 63 129 - -
Spst5g00457 252 SMART sant 60 108 IPR001005 -
Spst5g00457 252 SMART sant 7 57 IPR001005 -
Spst5g00457 252 MobiDBLite consensus disorder prediction 112 182 - -
Spst5g00457 252 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 145 IPR044676 GO:0003700|GO:0006355|GO:0043565
Spst5g00457 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Spst5g00457 252 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Spst5g00457 252 Gene3D - 8 60 - -
Spst5g00457 252 CDD SANT 63 106 IPR001005 -
Spst5g00457 252 Gene3D - 63 124 - -
Spst5g00457 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Spst5g00457 252 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Spst5g00457 252 CDD SANT 10 55 IPR001005 -
Spst5g00457 252 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Spst5g00457 252 MobiDBLite consensus disorder prediction 117 142 - -
Spst5g00457 252 FunFam Myb transcription factor 8 60 - -
Spst5g00457 252 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Spst5g00457 252 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00457 Spst-Chr5 3616017 3617059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00457 1 237 MYB Transcription Factor Family AT5G59780 57.083 2.35e-79 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst5g00457 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00457 K09422 - qsa:O6P43_028279 311.612