Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00453 ATGAAAAGAGGCAGAGAAGAGGGTGAGTTAGACAACATGGCTAATTGTTTGATGCTGTTGACCAAAGTTGGTGAGAGTGAAACCAAGTTAAGGGATAGTAATAATATGGGTGATTACAAGTGCAAAACTTGCCATAGAAGGTTCTCTTCTTTTCAAGCCCTTGGTGGCCACAGAGCAAGTCACAAGAAACCAAAGCTCATGATCACAGATCTTTCGTGTCATCGCGAGTTACCTAGTCCAACCACGAAACAACAACCTAGGATGCACCCATGTCCCATTTGTGGGCTTGAGTTTGCCATTGGACAAGCCCTGGGAGGGCACATGAGAAAACATAGAACTGCCATTAATGATGGCTTGTTGAATCGTAGAGATTCGGATTCTTTGTCCATCTTCAAGAAATCGAAAGACGGTGGAAGGTTGAATCTGTGTTTGGACTTGAACTTGATGCCATTGGAGGATGATGATCTTAAGCTCAACCTAAGAACACCCTTTCTCAATTGTTTCATGTGA 510 0.4314 MKRGREEGELDNMANCLMLLTKVGESETKLRDSNNMGDYKCKTCHRRFSSFQALGGHRASHKKPKLMITDLSCHRELPSPTTKQQPRMHPCPICGLEFAIGQALGGHMRKHRTAINDGLLNRRDSDSLSIFKKSKDGGRLNLCLDLNLMPLEDDDLKLNLRTPFLNCFM 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00453 169 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Spst5g00453 169 PANTHER ZINC FINGER PROTEIN ZAT5 8 154 - -
Spst5g00453 169 SMART c2h2final6 89 111 IPR013087 -
Spst5g00453 169 SMART c2h2final6 39 61 IPR013087 -
Spst5g00453 169 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Spst5g00453 169 Pfam C2H2-type zinc finger 89 113 - -
Spst5g00453 169 Pfam C2H2-type zinc finger 39 64 - -
Spst5g00453 169 Gene3D Classic Zinc Finger 20 114 - -
Spst5g00453 169 SUPERFAMILY beta-beta-alpha zinc fingers 39 111 IPR036236 -
Spst5g00453 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00453 Spst-Chr5 3586670 3587179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00453 1 160 C2H2 Transcription Factor Family AT2G28710 50.307 7.53e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst5g00453 zf-C2H2_6 3.4e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00453 - - vra:106758971 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00453 5 3586670 3587179 Spst2g02263 2 21802729 21803142 PCT