Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00452 ATGAATCTCTGGCGATTCAAAACTATACGATTATCCTTTTACGTCACACAGGACCAGCTGATGAAGCTGTTCACTCCATTCGGAGTAGTTACAGAAGTTGATCTCGTGATCGATCCTAGAACTAAAAGGCCCAAGGGGTTTGGGTTTGTCTCCTACAAGTCTCATATTGAAGCGGAAAAGGCTATGAAATCGATGAATGGCAGGGCAAGTGCACCCATGCAGAAAATTGTTGATGGAAGGCTGCTTTTGGTTGAACCTGCCAATAAATGA 270 0.437 MNLWRFKTIRLSFYVTQDQLMKLFTPFGVVTEVDLVIDPRTKRPKGFGFVSYKSHIEAEKAMKSMNGRASAPMQKIVDGRLLLVEPANK 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00452 89 SUPERFAMILY RNA-binding domain, RBD 11 88 IPR035979 GO:0003676
Spst5g00452 89 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 68 IPR000504 GO:0003723
Spst5g00452 89 SMART rrm1_1 8 85 IPR000504 GO:0003723
Spst5g00452 89 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 89 IPR000504 GO:0003723
Spst5g00452 89 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 10 89 - -
Spst5g00452 89 Gene3D - 9 89 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00452 Spst-Chr5 3564308 3571239 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00452 20 67 Eukaryotic Initiation Factors Gene Family AT5G06000 47.917 1.44e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00452 - K13195 ccaj:109806644 117.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00452 5 3564308 3571239 Spst5g00452 5 3564308 3571239 ECH