Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00447 ATGTCTGCGGCTTTGGATATGACGCTCGACGATATTATTAAGAACAACAAAAAGTCGGCCTCCACTAACACCAGGGGCCGAGGCCGAGCTTCGGGACCCGGACCTGCTCGCCGTCTCCCCAACCGTGCCGCTAATCGCCCCGCGCCTTACGCTGCCGCCAAGGCGCCGGAGACTGCGTGGCAGCACGATATGTATGCCGATCAGCCTGTTGCAGCGGCTTTTCAAGGTCAAGGTGGTCGTGCGTCTTCCATCGAAACAGGGACGAAGCTCTACATATCTAATTTGGATTATGGTGTTTCCAATGATGATATTAAGGAGTTGTTTCTTGAAGTTGGTGACTTGAAACGGCATACTGTTCACTATGACAGGAGTGGAAGATCGAAGGGTACGGCAGAAGTGGTCTTCTCGCGAAGAGCTGATGCAGTAGCTGCAGTGAAGAGGTACCACAATGTTCAGCTGGATGGGAAGCCAATGAAGGTAGAGATTGTGGGGACAAACATTGCGACACATGCTGCTGTGCCCACTGTGAATGGAACTTTTGGAAATTCTAGTGGACCTCCTAGAAGTGGACAAGGGAGAAGTGGACCACTAGGAAGGCTGCGTGGCACGGCTAGAGGGCGAGGCGGCAATCGAAGGGGCCGAGGACGTGGTAGAGGTCGTGATGAAAAAGTATCTGCTGAAGATCTCGATGCTGAGTTGGAGAAGTATCATGCTGAGGCTATGCAATTGAACTGA 735 0.5238 MSAALDMTLDDIIKNNKKSASTNTRGRGRASGPGPARRLPNRAANRPAPYAAAKAPETAWQHDMYADQPVAAAFQGQGGRASSIETGTKLYISNLDYGVSNDDIKELFLEVGDLKRHTVHYDRSGRSKGTAEVVFSRRADAVAAVKRYHNVQLDGKPMKVEIVGTNIATHAAVPTVNGTFGNSSGPPRSGQGRSGPLGRLRGTARGRGGNRRGRGRGRGRDEKVSAEDLDAELEKYHAEAMQLN 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00447 244 FunFam THO complex subunit 4 81 226 - -
Spst5g00447 244 MobiDBLite consensus disorder prediction 215 230 - -
Spst5g00447 244 MobiDBLite consensus disorder prediction 14 55 - -
Spst5g00447 244 MobiDBLite consensus disorder prediction 14 28 - -
Spst5g00447 244 MobiDBLite consensus disorder prediction 175 190 - -
Spst5g00447 244 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 242 - -
Spst5g00447 244 CDD RRM_THOC4 88 162 - -
Spst5g00447 244 SMART FoP_duplication_2 176 244 IPR025715 -
Spst5g00447 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 165 IPR000504 GO:0003723
Spst5g00447 244 SUPERFAMILY RNA-binding domain, RBD 78 194 IPR035979 GO:0003676
Spst5g00447 244 Gene3D - 71 227 IPR012677 -
Spst5g00447 244 MobiDBLite consensus disorder prediction 175 230 - -
Spst5g00447 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Spst5g00447 244 SMART rrm1_1 89 161 IPR000504 GO:0003723
Spst5g00447 244 Pfam C-terminal duplication domain of Friend of PRMT1 182 238 IPR025715 -
Spst5g00447 244 Coils Coil 226 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00447 Spst-Chr5 3514426 3516299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00447 67 162 Eukaryotic Initiation Factors Gene Family AT2G36660 27.083 7.23e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00447 K12881 - gmx:100783362 333.569