Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00440 ATGGAGAGTCGCAATGGTGTAAGTAGAGGACCAAGTGGAGCTCATGCAGTTTCGCGGTGGAGCCCTACGAAAGAGCAAACAGCAATGTTGGAGAACCTTTACAAACAGGGAATAAGGACTCCCAATACTGAGCAGATACAAGAGATTACCTCTAGACTCAGGGCTTATGGTCACATCCAGGGAAAGAATGTATTTTACTGGTTTCAGAATCACAAAGCACGCCAAAGACAGAAGCTGAAGCAGAAACAACAAAACATTTCATACTCTAATAACTTTCTTCTTGCGTCGCACCCCATTTGCCAAAATGTTGCCTGCGCCCCGTATTGTTCGCAACACAGTGGAATCAGCTTTTATTCTCAACAAGCAAAGATTTTTGCAGCTGGAGGAAATGGGTCAAGAATTGAGACAGCTATGCCCTTTGGGATGCCGAAACAATTGCAACAACCGGATTATAACTACACCATCAGAAGCAGCAAAACCTTAACTCTCTTTCCTCTTCATCCAACAGGCATTTTGGAAGAAAAAACTGCTAATCAAGTGTCTCCATCACATTCTTCAATTTCTGTCGATGTCACTGATACATCTTATGGTTCTCTTGGTGTTGATAAATATGGCCATCCTTAA 624 0.4263 MESRNGVSRGPSGAHAVSRWSPTKEQTAMLENLYKQGIRTPNTEQIQEITSRLRAYGHIQGKNVFYWFQNHKARQRQKLKQKQQNISYSNNFLLASHPICQNVACAPYCSQHSGISFYSQQAKIFAAGGNGSRIETAMPFGMPKQLQQPDYNYTIRSSKTLTLFPLHPTGILEEKTANQVSPSHSSISVDVTDTSYGSLGVDKYGHP 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00440 207 CDD homeodomain 19 73 IPR001356 GO:0003677
Spst5g00440 207 Gene3D - 8 95 - -
Spst5g00440 207 SUPERFAMILY Homeodomain-like 16 84 IPR009057 -
Spst5g00440 207 SMART HOX_1 15 82 IPR001356 GO:0003677
Spst5g00440 207 MobiDBLite consensus disorder prediction 1 23 - -
Spst5g00440 207 ProSiteProfiles 'Homeobox' domain profile. 13 78 IPR001356 GO:0003677
Spst5g00440 207 Pfam Homeodomain 18 77 IPR001356 GO:0003677
Spst5g00440 207 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 8 194 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00440 Spst-Chr5 3458119 3459026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00440 12 125 Wox Gene Family AT5G59340 54.167 7.57e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Spst5g00440 Homeodomain 1.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00440 - - gmx:100779632 252.677