Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00425 ATGGGAGTTTGTTTGAGCGCCCAAATTAAAGCTGAAAGCCCTTATAGCACTGGGTTCAATTCAAAGTATGTGAGCACAGATGGAAATTATCTTGGCAGCACAAACGATAAGGTTTCAGCGAACTCAGTACCCCAGACTCCTCGGAGTGAGGGTGAGATCTTGCAGTCGTCCAATTTGAAGAGCTTTACCTTATCAGAACTTAAGACGGCCACTAGAAATTTCCGTCCAGACAGTGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAGGGGTGGATCGATGAGAATTCATTGACTGCTACAAAACCTGGTACTGGCATTGTTATTGCTGTGAAAAGACTTAATCAAGATGGCATCCAGGGTCACAGGGAGTGGTTGGCTGAAGTCAACTATCTTGGACAGCTTTCTCATCCTCATCTAGTGAGACTGATTGGGTTTTGCCTTGAAGATGAACACCGCCTTCTCGTCTATGAATTTATGCCTCGTGGAAGCTTGGAAAACCATTTGTTCAGGAGAGGCTCATATTTTCAGCCACTTTCTTGGAGCCTCCGTTTGAAAGTTGCTCTAGATGCTGCCAGAGGCCTTGCGTTTCTTCACAGTGCCGAAACAAAAGTGATATATAGAGATTTTAAGACCTCAAACATCTTGCTGGATTCAAATTACAATGCAAAACTTTCTGATTTTGGGCTGGCAAAGGATGGACCAACGGGTGACAAAAGTCATGTCTCCACCAGGGTAATGGGAACCTACGGATATGCAGCTCCTGAATATCTAGCCACAGGTCATCTTACTGCCAAGAGTGATGTCTATAGTTTTGGAGTTGTCCTGCTGGAAATGTTATCTGGTAAGAGGGCAGTTGACAAGAATAGACCATCTGGACAACACAATTTGGTGGAATGGGGTAAACCATACCTGGCAAACAAACGCAAGATATTCCGCGTGCTAGACACCCGGCTTGAAGGACAATATTCAACAGATGATGCCTATAAGGTAGCCAACCTTGCCTTGCGGTGCCTGTCAATAGATTCCAAGTTCAGGCCAAACATGGATGAAGTGGTTACAACATTGGAGCAGTTGCAGGTTCCTAATGCAAATGGAGGCAATCAAAATCCTTCTCGTGTTCGAAGAAGAAGTGCTGATGTAAGTAGAGGGTATCAAAATCCTTCTGTTAATCGAGTTCGTAGAAGAAGTGCTGATGACATTAGCCGTATGGAGACTCCCTCAGCTTATCCCAGGCCCTCTGCTTCCCCTCTCTATACTTGA 1263 0.4473 MGVCLSAQIKAESPYSTGFNSKYVSTDGNYLGSTNDKVSANSVPQTPRSEGEILQSSNLKSFTLSELKTATRNFRPDSVLGEGGFGSVFKGWIDENSLTATKPGTGIVIAVKRLNQDGIQGHREWLAEVNYLGQLSHPHLVRLIGFCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAARGLAFLHSAETKVIYRDFKTSNILLDSNYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGKRAVDKNRPSGQHNLVEWGKPYLANKRKIFRVLDTRLEGQYSTDDAYKVANLALRCLSIDSKFRPNMDEVVTTLEQLQVPNANGGNQNPSRVRRRSADVSRGYQNPSVNRVRRRSADDISRMETPSAYPRPSASPLYT 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00425 420 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Spst5g00425 420 Gene3D Transferase(Phosphotransferase) domain 1 160 379 - -
Spst5g00425 420 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Spst5g00425 420 SUPERFAMILY Protein kinase-like (PK-like) 51 361 IPR011009 -
Spst5g00425 420 MobiDBLite consensus disorder prediction 361 420 - -
Spst5g00425 420 Pfam Protein tyrosine and serine/threonine kinase 78 356 IPR001245 GO:0004672|GO:0006468
Spst5g00425 420 FunFam Probable serine/threonine-protein kinase PBL8 160 375 - -
Spst5g00425 420 FunFam Serine/threonine-protein kinase BIK1 41 159 - -
Spst5g00425 420 PANTHER OS01G0588500 PROTEIN-RELATED 42 360 - -
Spst5g00425 420 MobiDBLite consensus disorder prediction 361 375 - -
Spst5g00425 420 CDD STKc_IRAK 80 359 - -
Spst5g00425 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Spst5g00425 420 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00425 Spst-Chr5 3362908 3365314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00425 27 356 Glycoside Hydrolase AT3G07070 46.041 3.00e-103 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Spst5g00425 PK_Tyr_Ser-Thr 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00425 - - gmx:100798404 794.267