Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00412 ATGCTTTCCACAAACTCTCTTGTGCAAAATTTTGGGGGTCCTCTATCGGTGTTTTCAAATCAGAACCAAGTAACAGAGGGGATTGAGTTTGATGATTCATCTTCTCCTTCTTCTGGAACAAGCTCAAATGGAGAAACAACCAAGTACTCCAACGCCATCCTCAGATACATAAGCGACATCCTCATGGATGAGGAAGACGACTTGGAGAACAAACCCTGCATGTTACAGGAATGTTTGAGACTCCAGGCGGCTGAAAAATCCTTCCTTGATGTCCTTGTTCGTCACAGCTACCCTTCTTCTTTCGGTGACGAAAGCCTCGACATCATAGACACTGATGAAAGTTACGGTCGCACTGCTAGTTTTGAGAGCAATGGCAGCTGCACCACTGATAATTCATGTGAGTCTGACTTGGTCAACGGTGTGGGTGAATTTGACTCTTCTTTCCTACGGCTGCAAACCCATCCAGCTGATTCCCCTGATGTAGTTCTTGACCCATTTGGGTCGTCACAAGCTGCTGGCTATTTTCATGATGCACTTGATCCATTTAGGGTTCGTGATGGAACTTGGAATATCTTCCAAACTCATACAAAGCCGCCGATGGTGGAAGAGAGTTCTTCGTCGCCAGCATCCAGAGAAAAAAGAAGCCATCAGATGGATGATGATGCTTCTCATGAACAAGATGGAAGAAGAGGCAACAAGGTCTCAGCTGTTTTTTCTAACGAGTCAGAGTCCCCAGAGATCTTAGACGAGGTGCTGCTTTGTCAAACTGGAAGAAGTAGATCTTCTGCTGAACCATCACAGGGTGTTGATTTAGGAGGGTCCAACGGAAAGGCAACACGCTCACGTTCAAAGAAAGGGTCCACCAAGGCGGGTACAGCTGTAGATTTATGGACCCTTCTAACTCAATGTGCACAGGCAGTGGCAAGCTTTGACCAAAGGAATGCAAATGACTTACTCAGCCAGATTAGACAACACTCTTCACCTTATGGGGATGGACTCCAACGTTTGGCTCATTACTTTGCCAATGGCCTTGAGATACGGTTGGCTGCTGGAACCCCATCATACGTGCCACTAGAAGTGGCAACTGCTGCTGATATGTTGAAAGCTTACAAACTATTTGTTACATCCTCTCCCTTGCAAAGGATGTCAAATTATTTGACAACCAAGACAGTCATTAGTCTTGTGAAAAATGAGAGCAGCGTTCATATTATTGACTTTGGTATTTCCTATGGTTTTCAGTGGCCCTGCCTTATCAAAGTACTGTCAGAAAGGCATGGTGGTCCTCCAAGGCTTCGTATAACAGGAATTGATCTCCCTCGGCCAGGATTTCGGCCTGCGGAAAGGGTTGAGGAGACAGGGCGACGTTTAGAAAACTACTGCAAGAAGTTCAATGTCCCTTTTGAATACAATTGCCTTGCACAGAAATGGGAAACTATAAAACTTGCAGATCTCAAGATAGACAGGAATGAAGTAACTGTTGTTAGTTGTTTCTACCGGCTGAAGAACCTGCCTGATGAAACTGTGGCAGTGGACTGTCCAAGAGAAGCTGTGTTGAAGTTGATTAGGAAGATCAATCCAAACATCTTCTTCCATGGGGTGGTCAATGGGACTTATAGTGCGCCTTTTTTCCTGACACGGTTCAGGGAAGCGCTATACCACTTCTCATCACTGTTTGATATGTTCGAGGCTAATGTGCCTCGTGAAGACTCGCAAAGGGTGATGTTTGAGAAAGGGATGCTTGGAAGGGATGCCATCAATGTTATTGCGTGTGAGGGGGCTGAGAGGGTTGAGAGACCAGAGACCTACAAGCAGTGGCAGGTTAGGAACCTGAGAGCTGGGTTCAAGCAAGTCCATTTGGATCCTCAGTTGGTGAATGATGCGAAACAAATGGTGAAGAGGGAGTATCACAAAGATTTTGTAGTGGCTGAGGATGGCAAGTGGGTTTTGCAGGGTTGGAAAGGGCGAATTCTGAATGCCATTTCTGCTTGGACTCCTGCTTAA 2001 0.4593 MLSTNSLVQNFGGPLSVFSNQNQVTEGIEFDDSSSPSSGTSSNGETTKYSNAILRYISDILMDEEDDLENKPCMLQECLRLQAAEKSFLDVLVRHSYPSSFGDESLDIIDTDESYGRTASFESNGSCTTDNSCESDLVNGVGEFDSSFLRLQTHPADSPDVVLDPFGSSQAAGYFHDALDPFRVRDGTWNIFQTHTKPPMVEESSSSPASREKRSHQMDDDASHEQDGRRGNKVSAVFSNESESPEILDEVLLCQTGRSRSSAEPSQGVDLGGSNGKATRSRSKKGSTKAGTAVDLWTLLTQCAQAVASFDQRNANDLLSQIRQHSSPYGDGLQRLAHYFANGLEIRLAAGTPSYVPLEVATAADMLKAYKLFVTSSPLQRMSNYLTTKTVISLVKNESSVHIIDFGISYGFQWPCLIKVLSERHGGPPRLRITGIDLPRPGFRPAERVEETGRRLENYCKKFNVPFEYNCLAQKWETIKLADLKIDRNEVTVVSCFYRLKNLPDETVAVDCPREAVLKLIRKINPNIFFHGVVNGTYSAPFFLTRFREALYHFSSLFDMFEANVPREDSQRVMFEKGMLGRDAINVIACEGAERVERPETYKQWQVRNLRAGFKQVHLDPQLVNDAKQMVKREYHKDFVVAEDGKWVLQGWKGRILNAISAWTPA 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00412 666 ProSiteProfiles GRAS family profile. 287 664 IPR005202 -
Spst5g00412 666 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 227 657 IPR005202 -
Spst5g00412 666 MobiDBLite consensus disorder prediction 194 232 - -
Spst5g00412 666 MobiDBLite consensus disorder prediction 207 231 - -
Spst5g00412 666 Pfam GRAS domain family 298 664 IPR005202 -
Spst5g00412 666 MobiDBLite consensus disorder prediction 257 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00412 Spst-Chr5 3290375 3292375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00412 49 665 GRAS Transcription Factor Family AT2G29060 43.671 5.31e-166 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst5g00412 GRAS 1.4e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00412 - - aprc:113855970 1032.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00412 5 3290375 3292375 Spst5g00412 5 3290375 3292375 ECH
Spst5g00412 5 3290375 3292375 Spst2g02317 2 22522886 22524904 PCT